PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG318900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 421aa MW: 45978.3 Da PI: 12.2165 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.4 | 1.5e-14 | 134 | 185 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++Y+k+L+ Pavir.6KG318900.1.p 134 QRMTHIAVERNRRKQMNEYLAALRSLMPPS---YVQRGDQASIIGGAINYVKELE 185 79****************************...9******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.22E-15 | 132 | 189 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-14 | 132 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.31 | 133 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.54E-18 | 133 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.7E-12 | 134 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.2E-12 | 139 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MALEAVVFSE ELFGSWAMAA APGGGGWSWG DQGENEHGGA VERVMDLEGG AAAYWEVGAN 60 SSALMMQGAD HQEPDGISLS APPLPENGGG GGNNAAAAGG AGFSQEVAVP PPPAGRRKRR 120 RTRSVKNREE VESQRMTHIA VERNRRKQMN EYLAALRSLM PPSYVQRGDQ ASIIGGAINY 180 VKELEQLLQS LEARKPRPPP GPVPRRRRLR RRRRGGALRG LLHLPAALHE RRRRPLPRHR 240 ERATRRRRGT EQRRRGRRQQ RRRRRRRRLG LAAVVGGGRG GDHGGEPREP EAAVPAAPAA 300 AAAPCRRAAG PPPHRAAPQR HQRRPPHGPL LPQPQGAYLP TTLPRRHLSP PSPRPAGLGF 360 RARRALSGTT PPNSPVSMFS MKPATWGQRQ AVVYEHYVAV ELVDRASGRA RHCLLMYPSS 420 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 120 | RKRRR |
2 | 116 | 121 | RKRRRT |
3 | 134 | 145 | RMTHIAVERNRR |
4 | 252 | 267 | RRRGRRQQRRRRRRRR |
5 | 252 | 268 | RRRGRRQQRRRRRRRRL |
6 | 253 | 268 | RRGRRQQRRRRRRRRL |
7 | 256 | 263 | RRQQRRRR |
8 | 257 | 266 | RQQRRRRRRR |
9 | 259 | 265 | QRRRRRR |
10 | 260 | 267 | RRRRRRRR |
11 | 261 | 267 | RRRRRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG318900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107626 | 7e-88 | AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence. | |||
GenBank | HQ858861 | 7e-88 | HQ858861.1 Oryza sativa Japonica Group isolate UT1670 bHLH transcription factor mRNA, partial cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP741 | 38 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22490.1 | 8e-33 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG318900.1.p |