PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG316900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 231aa    MW: 24624.1 Da    PI: 8.7565
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG316900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.22.8e-11114163352
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                          e +r rr+ +NRe+ArrsR RK+ ++ eL   v  L + N++L + l++ 
  Pavir.6KG316900.1.p 114 EERRRRRMVSNRESARRSRMRKQRQLTELWAQVSHLRGANRRLLDDLNRA 163
                          67899**************************************9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.5E-8111162No hitNo description
SMARTSM003384.9E-9112176IPR004827Basic-leucine zipper domain
PfamPF001701.2E-8113162IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.036114184IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.43E-10116163No hitNo description
PROSITE patternPS000360119134IPR004827Basic-leucine zipper domain
CDDcd147022.86E-13121165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MYHNHFHGEV ASLRFLSPPS ASFAHHHMNM ALPPQAYFPP SFQPASAFHD DAAASLLSVD  60
GGDVPSFEVD TVVREAAAHL AGRNGASPSS GSGSDGGAAG SGYQMNAVAV AAEEERRRRR  120
MVSNRESARR SRMRKQRQLT ELWAQVSHLR GANRRLLDDL NRALRGCADA RRESARLRDE  180
KAELAKKLEH LLQSATATEK GASSAAAAAS SDRSCSSEPG NTTASADTSE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128135RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG316900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9766322e-99EU976632.1 Zea mays clone 985663 bZIP protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821559.11e-100bZIP transcription factor 2-like
TrEMBLA0A3L6RJ771e-106A0A3L6RJ77_PANMI; G-box-binding factor 1
STRINGPavir.Fa00602.1.p1e-165(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126