PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG307800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 352aa    MW: 36953.1 Da    PI: 8.4252
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG307800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.53.4e-14273324556
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                          +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ N +L+k+ ee+ ++ 
  Pavir.6KG307800.1.p 273 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKELNAELQKKQEEMMEMQ 324
                          79****************************************9999998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.5E-13269333IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.932271322IPR004827Basic-leucine zipper domain
CDDcd147075.83E-28273327No hitNo description
PfamPF001701.5E-12273325IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-10273322No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-14273322No hitNo description
PROSITE patternPS000360276291IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010255Biological Processglucose mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDLKDGWGRG AAGPGPLSRQ GSIYSLTFDE LQSTLGGMGG GLGKDFGSMN MDELLRSIWT  60
AEESQVMASA SAAGAPAEDG AAALQRQGSL TLPRTLSVKT VDEVWRDFVR EVPPPAGAEP  120
QPTRQPTLGE MTLEEFLVRA GVVRDNPAAA AMAAAAAVPA QPVAPRPIQA VSNGASIFFG  180
NFGAASDAGP GAMGFAPVGI GDQGMGNGLM PGVAGMASAA VTVSPVDTSV AQLDSVGKGN  240
GDLSSPMAPV PYPFVGVIRG RRSGAGVEKV VERRQRRMIK NRESAARSRA RKQAYTMELE  300
AEVQKLKELN AELQKKQEEM MEMQKNQVLE VVSNPYAQKK RCLQRTLTGP W*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.225310.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves and embryos. {ECO:0000269|PubMed:10611387}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269|PubMed:10611387}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00186DAPTransfer from AT1G45249Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG307800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA). {ECO:0000269|PubMed:10611387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973666.10.0bZIP transcription factor TRAB1
SwissprotQ6ZDF31e-150TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBLK3YIB00.0K3YIB0_SETIT; Uncharacterized protein
STRINGPavir.Fa00674.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70638147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41070.32e-38bZIP family protein
Publications ? help Back to Top
  1. Kagaya Y,Hobo T,Murata M,Ban A,Hattori T
    Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1.
    Plant Cell, 2002. 14(12): p. 3177-89
    [PMID:12468735]
  2. Kobayashi Y, et al.
    Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors.
    Plant J., 2005. 44(6): p. 939-49
    [PMID:16359387]
  3. Kobayashi F,Maeta E,Terashima A,Takumi S
    Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings.
    Physiol Plant, 2008. 134(1): p. 74-86
    [PMID:18433415]