PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.6KG306400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 260aa MW: 28054.7 Da PI: 7.8861 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.5 | 1.2e-08 | 180 | 220 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L Pavir.6KG306400.1.p 180 ARMRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 220 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.085 | 171 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-12 | 176 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.53E-14 | 176 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-13 | 177 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.7E-6 | 180 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.11E-6 | 194 | 225 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence Send to blast |
MDFDMLNSHP EAQLELMNAM LQLEQLTSFP DHHGAMMMVP STTPHHVAMM MVPSTPPSPP 60 CMQQQQAHHH FSSSVPHHMS AGGANGRATY HDHHQYSSAV TSHASCNGSA RSEYAAQDYP 120 AAAAAGGNGG DGATAVGSSA MREMIFRVAA LQPVNIDPEM VRPPKRRNVR ISTDPQSVAA 180 RMRRERISER IRILQRLVPG GTKMDTASML DEAIHYVKFL KTQVQSLERA AAASGRRPAA 240 PAVDDGGDAI YPGRISGQW* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 161 | 166 | RPPKRR |
2 | 180 | 185 | RMRRER |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.6KG306400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ726973 | 1e-159 | KJ726973.1 Zea mays clone pUT3674 bHLH transcription factor (bHLH113) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821983.1 | 1e-137 | transcription factor HEC2-like | ||||
TrEMBL | A0A2S3I359 | 1e-135 | A0A2S3I359_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fa00680.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3103 | 36 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67060.1 | 9e-38 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.6KG306400.1.p |