PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG301100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 469aa    MW: 51892.7 Da    PI: 10.0685
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG301100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.2e-084681340
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                          W++eE e+++ a +++G++ W++Ia  +   Rt  ++
  Pavir.6KG301100.1.p 46 QWSKEELERFYGAYRKYGKD-WRKIAGAIR-DRTSDMV 81
                         6*****************99.********9.9998665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.16E-114192IPR009057Homeodomain-like
SMARTSM007170.00194391IPR001005SANT/Myb domain
PROSITE profilePS500906.0514586IPR017877Myb-like domain
PfamPF002491.0E-64686IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-64685IPR009057Homeodomain-like
CDDcd001671.37E-54789No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MASARKVRNA NKRYAKINDD WKTEDTASVP KNKVRKKKLS DMLGSQWSKE ELERFYGAYR  60
KYGKDWRKIA GAIRDRTSDM VEALYNMNKA YLSLPEGTAT AAGLIAMMTD HYNILDGSNS  120
DHESNDSPKA SRKPQKRGRA KFPSVSKTSD TCYPDQLQSQ PASSSYGCLS LLKKKRSGDH  180
FVGNRPRAVG KRTPRVPVAS MYHRDERGAP NRQAKPDSNN GDDGAHVAAL ALAEVYQRGG  240
SPQVSQTPGR SGDHMFMSPI KSNDRKNADS EMDSSKLHGF QLDADYPEAS LGSREVETGD  300
YTKVASYLMT NKGSPSGKPQ KKVKRSQKRR KKAARKTGDQ YEYDREACSG TEEGHSGRKV  360
KEEPELETLG RKTAWPSSTS NKRSRQLFFD DESSALDALH TLADLSVNIL QPSSVVESES  420
SAQIKDENKD NDSDGKPSMP AAVSVYEQKD NSKSISKKTQ KAVTNCKH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319335QKKVKRSQKRRKKAARK
2322328VKRSQKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.93390.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG301100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820688.10.0protein ALWAYS EARLY 2-like
TrEMBLA0A2T7D9550.0A0A2T7D955_9POAL; Uncharacterized protein
TrEMBLA0A2T8IHJ00.0A0A2T8IHJ0_9POAL; Uncharacterized protein
STRINGPavir.Fa00527.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62302331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.22e-79DNA binding