PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG296200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 505aa    MW: 51917.3 Da    PI: 8.449
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG296200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.9e-18311365256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++keq   Lee F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  Pavir.6KG296200.1.p 311 RKKLRLSKEQSAFLEESFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTK 365
                          788899***********************************************98 PP
2HD-ZIP_I/II127.27.1e-41311401192
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlskeq+++LEesF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+++al+een+rL+ke +eLr +
  Pavir.6KG296200.1.p 311 RKKLRLSKEQSAFLEESFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCEALTEENRRLHKELAELR-A 399
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 lk 92 
                          lk
  Pavir.6KG296200.1.p 400 LK 401
                          65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-18289368IPR009057Homeodomain-like
SuperFamilySSF466896.84E-18301368IPR009057Homeodomain-like
PROSITE profilePS5007117.248307367IPR001356Homeobox domain
SMARTSM003898.0E-16309371IPR001356Homeobox domain
CDDcd000861.19E-17311368No hitNo description
PfamPF000461.5E-15311365IPR001356Homeobox domain
PROSITE patternPS000270342365IPR017970Homeobox, conserved site
CDDcd146866.88E-4358399No hitNo description
PfamPF021837.2E-11367401IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.9E-26367410IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MLPPLPRSLA AAGGSAATAA LAWPCQPGPI RKGEHGSAVP IQHPWPCAPA VFFFNPALMI  60
RSPPLPLPAP FCRATHVRSS NPCPAGSKPS PPARRDTDTS SGLVHPRLSS ASPCSLVASS  120
LTLAVPHSWC GGMELGLSLG EPDAGRAAAP ELGLGLGVGA AGRGDDARRG SGAAARAGAG  180
ARWWAAPVAE PEPAVRLSLV PSSSLGLHWA PPPSSDCGGR SSEAPARGFD VNRAPSAAAS  240
AFAALEEEDD DEEDPGAGAL SSSSPNDSAG SFPLDLGRRA AAHAEAAAAR ACGERSSSRA  300
SDEDEGASAA RKKLRLSKEQ SAFLEESFKE HSTLNPKQKA ALAKQLNLRP RQVEVWFQNR  360
RARTKLKQTE VDCEYLKRCC EALTEENRRL HKELAELRAL KTAPPFYMHL PATTLSMCPS  420
CERVASNPTS TAASTSAPAS SAPPAPTAAA TSSSSSAAAV TATATAARGE PRPSSFAALF  480
AATRSFPLAS QSRPPAPAPA SNCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359367RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.239800.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG296200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411961e-163AK241196.1 Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702116.11e-167homeobox-leucine zipper protein HOX27
SwissprotQ6YPD01e-119HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
TrEMBLK3YL331e-166K3YL33_SETIT; Uncharacterized protein
STRINGPavir.Fa00698.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-67homeobox from Arabidopsis thaliana