PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG273500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 294aa    MW: 31082.1 Da    PI: 9.2207
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG273500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd+ lv +v+++G+g+W++++   g+ R+ k+c++rw +yl
  Pavir.6KG273500.1.p 14 KGPWTPEEDLVLVSYVQEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 61
                         79********************************************97 PP
2Myb_DNA-binding47.54e-1567112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+++  E++l++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Pavir.6KG273500.1.p  67 RGNFSVKEEKLIIHLQALLGNR-WAAIASYLP-DRTDNDIKNYWNTHL 112
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-24564IPR009057Homeodomain-like
PROSITE profilePS5129424.975965IPR017930Myb domain
SuperFamilySSF466892.38E-3011108IPR009057Homeodomain-like
SMARTSM007174.0E-131363IPR001005SANT/Myb domain
PfamPF002493.2E-161461IPR001005SANT/Myb domain
CDDcd001671.24E-111661No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2365116IPR009057Homeodomain-like
PROSITE profilePS5129419.98366116IPR017930Myb domain
SMARTSM007178.0E-1666114IPR001005SANT/Myb domain
PfamPF002491.8E-1467112IPR001005SANT/Myb domain
CDDcd001677.11E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGRPPCCEKA GVKKGPWTPE EDLVLVSYVQ EHGPGNWRAV PTNTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF SVKEEKLIIH LQALLGNRWA AIASYLPDRT DNDIKNYWNT HLKKKLATMG  120
ADGAGAGGAE ARSGRAAAPK GQWERRLQTD IHTARQALRE ALSLDPVKLP PAKTEPLPQP  180
APAQPSQAAY ASSAENIARL LEGWMRPGTG SAGTKAPSGS RSSASAVSGG EGASASHSGT  240
ARTPEGSTGT SKAEDAGPMP AFSMLESWLL DDGMGHGDAG LMGVPLADPC EFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-25141164105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00579DAPTransfer from AT5G62470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG273500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0357491e-149BT035749.2 Zea mays full-length cDNA clone ZM_BFb0081I17 mRNA, complete cds.
GenBankKJ7278811e-149KJ727881.1 Zea mays clone pUT5974 MYB transcription factor (MYB83) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821217.11e-156myb-related protein 306-like isoform X1
SwissprotP813921e-105MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A3L6PM731e-169A0A3L6PM73_PANMI; Uncharacterized protein
STRINGPavir.Fa00895.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.23e-89myb domain protein 96
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]