PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6KG272000.3.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 372aa MW: 38970.3 Da PI: 8.3096

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6KG272000.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.9	2.5e-29	113	166	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rlrWt eLH rF av+qLGG++kAtPk++l++m v+gLtl+h+kSHLQkYRl Pavir.6KG272000.3.p 113 ARLRWTRELHGRFALAVAQLGGADKATPKSVLRAMAVPGLTLYHLKSHLQKYRL 166 7****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-30	110	170	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.55E-15	112	169	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.8E-21	113	167	IPR006447	Myb domain, plants
Pfam	PF14379	4.7E-14	229	268	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MAWPPAARAI FPCRRFAPGG VSIHIPPEVE TEPQPGRNIS PPHRWSPGKG THHPAAYKNR 60 SLAAAVEAKL PPSSVTPAAA ASHAGRAAAA AIRSAALVGT LEMASSCGGE ARARLRWTRE 120 LHGRFALAVA QLGGADKATP KSVLRAMAVP GLTLYHLKSH LQKYRLAVSR GPVATAPGEG 180 SDDRWSSSSE SQPDEHDEDA AAAAEWRGAF AAGGGTKEAP CDSPRSMARM QREVQRKPQE 240 QIEVQRHLQL RIEAQGRYLQ SVLRRAEEVL ADHSLGSPAS AVESGCLSSS SSLSPSPPRR 300 RSAGSCVTSS SSSEAESQAG AGSKRPCTCA AAEQPVQGKR SFLQSHEAGE ADADADAEAE 360 DGSSPEIDLN R*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MAWPPAARAI FPCRRFAPGG VSIHIPPEVE TEPQPGRNIS PPHRWSPGKG THHPAAYKNR  60
SLAAAVEAKL PPSSVTPAAA ASHAGRAAAA AIRSAALVGT LEMASSCGGE ARARLRWTRE  120
LHGRFALAVA QLGGADKATP KSVLRAMAVP GLTLYHLKSH LQKYRLAVSR GPVATAPGEG  180
SDDRWSSSSE SQPDEHDEDA AAAAEWRGAF AAGGGTKEAP CDSPRSMARM QREVQRKPQE  240
QIEVQRHLQL RIEAQGRYLQ SVLRRAEEVL ADHSLGSPAS AVESGCLSSS SSLSPSPPRR  300
RSAGSCVTSS SSSEAESQAG AGSKRPCTCA AAEQPVQGKR SFLQSHEAGE ADADADAEAE  360
DGSSPEIDLN R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	111	170	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	111	170	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-16	112	167	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	112	167	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	112	167	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	112	167	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	111	170	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	111	170	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	111	170	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	111	170	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	111	170	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	111	170	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.16446	0.0	leaf\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6KG272000.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU968975	3e-71	EU968975.1 Zea mays clone 325336 MYR1 mRNA, complete cds.
GenBank	KJ726839	3e-71	KJ726839.1 Zea mays clone pUT3379 G2-like transcription factor (GLK6) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822647.1	1e-118	myb family transcription factor PHL8-like
TrEMBL	A0A3L6PR01	1e-126	A0A3L6PR01_PANMI; Myb family transcription factor APL-like
STRING	Pavir.Fa00884.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	4e-38	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pavir.6KG272000.3.p