PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG272000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 413aa    MW: 44418.5 Da    PI: 11.319
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG272000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.73e-29113166255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          +rlrWt eLH rF  av+qLGG++kAtPk++l++m v+gLtl+h+kSHLQkYRl
  Pavir.6KG272000.1.p 113 ARLRWTRELHGRFALAVAQLGGADKATPKSVLRAMAVPGLTLYHLKSHLQKYRL 166
                          7****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-30110170IPR009057Homeodomain-like
SuperFamilySSF466896.45E-15112169IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-21113167IPR006447Myb domain, plants
PfamPF143795.5E-14229268IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MAWPPAARAI FPCRRFAPGG VSIHIPPEVE TEPQPGRNIS PPHRWSPGKG THHPAAYKNR  60
SLAAAVEAKL PPSSVTPAAA ASHAGRAAAA AIRSAALVGT LEMASSCGGE ARARLRWTRE  120
LHGRFALAVA QLGGADKATP KSVLRAMAVP GLTLYHLKSH LQKYRLAVSR GPVATAPGEG  180
SDDRWSSSSE SQPDEHDEDA AAAAEWRGAF AAGGGTKEAP CDSPRSMARM QREVQRKPQE  240
QIEVQRHLQL RIEAQGRYLQ SVLRRAEEVL ADHSLGSPAS AVESGCLSSS SSLSPSPPRR  300
RSAAGAGQEE LPAEPRGRGS RRRRRRRSRG RQLTRDRSQQ VGEEQKTIAI RRFRSISAAC  360
AEHREQGMIG GVASKAGTRL FHQCLMLLQV CNQRLVMLHC KPAATTLLFI IP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-17112170260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-17112170260Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-17112167156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-17112167156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-17112167156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-17112167156Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-17112170260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-17112170260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-17112170260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-17112170260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-17112170260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-17112170260Protein PHOSPHATE STARVATION RESPONSE 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317326RGSRRRRRRR
2320326RRRRRRR
3320330RRRRRRRSRGR
4321328RRRRRRSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.151951e-143root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG272000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9689753e-71EU968975.1 Zea mays clone 325336 MYR1 mRNA, complete cds.
GenBankKJ7268393e-71KJ726839.1 Zea mays clone pUT3379 G2-like transcription factor (GLK6) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.Fa00884.1.p1e-179(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112643038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.32e-37G2-like family protein