PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG271800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 397aa    MW: 41154.9 Da    PI: 8.6299
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG271800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-1582127147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ed +l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Pavir.6KG271800.1.p  82 RGHWRPAEDAKLRELVALFGPQNWNLIAERLD-GRSGKSCRLRWFNQ 127
                          899*****************************.***********996 PP
2Myb_DNA-binding53.55.6e-17135177246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           ++T eE+e+l  a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Pavir.6KG271800.1.p 135 RPFTDEEEERLMAAHRFYGNK-WAMIARLFP-GRTDNAVKNHWHV 177
                          68*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.23177128IPR017930Myb domain
SMARTSM007171.9E-1381130IPR001005SANT/Myb domain
PfamPF002491.8E-1582127IPR001005SANT/Myb domain
SuperFamilySSF466891.31E-2782175IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-2583135IPR009057Homeodomain-like
CDDcd001671.32E-1285126No hitNo description
PROSITE profilePS5129425.352129183IPR017930Myb domain
SMARTSM007172.3E-13133181IPR001005SANT/Myb domain
PfamPF002494.1E-13134176IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-20136182IPR009057Homeodomain-like
CDDcd001674.86E-11136176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MPCSSPAATW LLRVGPAADQ QASSSASSSK GGSRVLPPGA ATMDTGGAAA AAGRGGGGNA  60
HASDPQESSS SGGQSSSRLA ARGHWRPAED AKLRELVALF GPQNWNLIAE RLDGRSGKSC  120
RLRWFNQLDP RISKRPFTDE EEERLMAAHR FYGNKWAMIA RLFPGRTDNA VKNHWHVIMA  180
RKYREQSTAY RRRKLNQAVQ RKLEAAAAVM PPAAGPGGDA AAVPAAAHHH HHLLAAAAAA  240
HDAAYGYGFA ADPYGFGFRH YCSSFLFPPG AAASAEDDAP PTPFCLFPGP GIGAAAHADR  300
RLPWPPSPDD AAGGGGRYGE PPPPVLLPVP GGGWIEGVGG HHHEPHHQFV VLDRDGGGAA  360
AAFQGVGTIQ GGGAHFDAAA AAPSPAFIDF LGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-33821827107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG271800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0419831e-151BT041983.1 Zea mays full-length cDNA clone ZM_BFb0095C08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821466.11e-161transcription factor CSA-like
TrEMBLA0A3L6RKT71e-160A0A3L6RKT7_PANMI; Putative MYB DNA-binding domain superfamily protein
STRINGPavir.Fa00885.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.17e-70myb domain protein 105