PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG270600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 371aa    MW: 37725.8 Da    PI: 5.5555
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG270600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.23.9e-15138184354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r+h+e+ErrRR+riNs +++Lr+llP+      +K +Ka+ L +++e++k+L
  Pavir.6KG270600.1.p 138 RSHSEAERRRRQRINSHLARLRSLLPNT-----TKTDKASLLAEVIEHVKEL 184
                          78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.288135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-12138184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-13138187No hitNo description
SuperFamilySSF474596.15E-15139190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-14139190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-14141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.6E-6237284No hitNo description
SuperFamilySSF550212.52E-5237284No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MWEAGGVHGS HEALLLQAAG SGAAGGDYGH AGPALLPWLG PAAAPGFSYM AAPHHHQGPP  60
FGAEAAAAGA AFGFGGGYGG DGGQLGVFGA LEPPLPPPPP PPPQGPRMVS GLLGTLQAEL  120
GRMTAKEIMD AKALAASRSH SEAERRRRQR INSHLARLRS LLPNTTKTDK ASLLAEVIEH  180
VKELKRQTSA VLGAAGEGGG GEEASAARQH LLLPTESDEL AVDAGEDGEG RLVVRASLCC  240
EDRAGLIPDI ARALAALRLR ACRAEIATLG GRVRNVFLIT TADDGEDEEG DDGEEGDGGD  300
GDDDAADGCG ARASSHHRRH EVVASIQEAL RGVMDRKTAS SDTSSSSGGG GGGGSIKRQR  360
MSGAHEQGSL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG270600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096161e-158AK109616.1 Oryza sativa Japonica Group cDNA clone:002-137-H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820189.11e-157transcription factor bHLH30-like
TrEMBLA0A2S3I2S11e-155A0A2S3I2S1_9POAL; Uncharacterized protein
STRINGSi013911m1e-143(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-48bHLH family protein