PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG270000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 283aa    MW: 30483.3 Da    PI: 7.3246
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG270000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.61.1e-34124214385
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec..eaesssssas 83 
                           ++drhski T++g RdRR+Rls+ +a++fF+Lqd+LGfdk+skt++WLl+q+kpai+ l+         +sss+  c  ++++++++a+
  Pavir.6KG270000.1.p 124 YRTDRHSKIRTAQGVRDRRMRLSVGVAREFFALQDRLGFDKASKTVNWLLTQSKPAIDRLPAVvtkgggeGSSSS-TCcfKDSREEKAAE 212
                          589**********************************************************99999998544444.55453333333333 PP

                  TCP  84 ns 85 
                          n 
  Pavir.6KG270000.1.p 213 NG 214
                          22 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136933.985125183IPR017887Transcription factor TCP subgroup
PfamPF036344.8E-33125207IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MLPFYPNSRP HRHHHHCVYQ QEQSLLQNPT AAAAAAFLMP ATASMSAWDG YGAQIFPADM  60
MLRHQETLEA VLQHPAATVL APLRAPEAGQ PAAGEGELRD AAPAVADGGA GGVHGAAVPR  120
RRPYRTDRHS KIRTAQGVRD RRMRLSVGVA REFFALQDRL GFDKASKTVN WLLTQSKPAI  180
DRLPAVVTKG GGEGSSSSTC CFKDSREEKA AENGRSRVGG RDGPAAALME EHGGGEVDWI  240
ASDAAAAAPP LPPLPMDELE YYYQYYLQLE EMMRCNNGGG PR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-15130184155Putative transcription factor PCF6
5zkt_B2e-15130184155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG270000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0634574e-73BT063457.1 Zea mays full-length cDNA clone ZM_BFc0065H12 mRNA, complete cds.
GenBankEU9756364e-73EU975636.1 Zea mays clone 494952 teosinte branched1 protein mRNA, complete cds.
GenBankKJ7268964e-73KJ726896.1 Zea mays clone pUT3439 TCP transcription factor (TCP15) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973503.21e-132transcription factor TB1
TrEMBLA0A3L6PR161e-112A0A3L6PR16_PANMI; Transcription factor TEOSINTE BRANCHED 1-like
STRINGPavir.Fa00870.1.p1e-177(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.25e-25TCP family protein