PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG244900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Nin-like | ||||||||
Protein Properties | Length: 130aa MW: 14056.7 Da PI: 5.7765 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 53.8 | 3.8e-17 | 75 | 113 | 2 | 40 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyG 40 ++ +++e +s+yFs+pik+AA+eL+v+lTvLKr+CR +G Pavir.6KG244900.1.p 75 KQGLTFELVSRYFSMPIKQAAQELDVGLTVLKRRCRALG 113 6789*********************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 11.649 | 62 | 129 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 7.5E-13 | 78 | 114 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
YQIGRFSQHS SADYLLGEET HLCAISCPES SFSQVNAEEL GCLSEVDFAS FWALVEEEDA 60 RRKSEEGPRS GQGKKQGLTF ELVSRYFSMP IKQAAQELDV GLTVLKRRCR ALGTPPAAAA 120 AGPSGRRST* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG244900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822796.1 | 2e-53 | protein RKD1 | ||||
TrEMBL | A0A3L6RT05 | 1e-54 | A0A3L6RT05_PANMI; Protein RKD3-like | ||||
STRING | Pavir.J14787.1.p | 1e-68 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74480.1 | 3e-09 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG244900.1.p |