PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG224200.9.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 372aa    MW: 40639.4 Da    PI: 7.3655
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG224200.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR41.82.1e-13154191341
                  TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                           k+C+C++skClk+YC Cfa g++C++ C+C++C+N+ +
  Pavir.6KG224200.9.p 154 IKNCKCRNSKCLKLYCGCFATGRYCKD-CNCTNCSNNGS 191
                          689************************.********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.4E-10152192IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163411.795153216IPR005172CRC domain
PfamPF036385.6E-10155189IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDKPPELSPG SVHLDIASAF YAGNPEIATT AAALSQALGP AQTLPRIKPS SQSLQSLLML  60
WPPVIWPTPA AVKHPMPPPP LPPAKKLQVH RPLPKLEMRK PLQQTSLVLE QESLKQEMLV  120
MLLTSATSIN MMLNSQNRWT ETLSGSKDKT PASIKNCKCR NSKCLKLYCG CFATGRYCKD  180
CNCTNCSNNG SHENARARQD AINAVLECRT AAFMPKAGSR SCAMQSSETL LSFPSSVDDD  240
KGLVSERNTH GHSELGPHEV TYRAVLADIV QVEDVNELCK LLILASRQAA EAFLDSGIME  300
NTSTEKLDRA ESCLSSTNND REAVQKEPDI HACLPESSSY ERHDTKKPVS PGSQNLPDIF  360
RAREVCTDKF P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG224200.9.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235073.11e-50protein tesmin/TSO1-like CXC 7 isoform X1
RefseqXP_014755713.11e-50protein tesmin/TSO1-like CXC 7 isoform X1
RefseqXP_014755714.12e-51protein tesmin/TSO1-like CXC 6 isoform X2
TrEMBLA0A2T7D6P39e-87A0A2T7D6P3_9POAL; Uncharacterized protein
STRINGPavir.Fa01466.1.p1e-149(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.16e-18Tesmin/TSO1-like CXC domain-containing protein