PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG224200.5.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 275aa    MW: 30310.2 Da    PI: 6.4911
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG224200.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.41.4e-135794341
                  TCR  3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41
                          k+C+C++skClk+YC Cfa g++C++ C+C++C+N+ +
  Pavir.6KG224200.5.p 57 IKNCKCRNSKCLKLYCGCFATGRYCKD-CNCTNCSNNGS 94
                         689************************.********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.4E-105595IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163411.79556119IPR005172CRC domain
PfamPF036383.7E-105892IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MRKPLQQTSL VLEQESLKQE MLVMLLTSAT SINMMLNSQN RWTETLSGSK DKTPASIKNC  60
KCRNSKCLKL YCGCFATGRY CKDCNCTNCS NNGSHENARA RQDAINAVLE CRTAAFMPKA  120
GSRSCAMQSS ETLLSFPSSV DDDKGLVSER NTHGHSELGP HEVTYRAVLA DIVQVEDVNE  180
LCKLLILASR QAAEAFLDSG IMENTSTEKL DRAESCLSST NNDREAVQKE PDIHACLPES  240
SSYERHDTKK PVSPGSQNLP DIFRAREVCT DKFP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG224200.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T7D6P35e-76A0A2T7D6P3_9POAL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.12e-18Tesmin/TSO1-like CXC domain-containing protein