PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.6KG224200.18.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | CPP | ||||||||
Protein Properties | Length: 251aa MW: 27643.1 Da PI: 8.4922 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 42.6 | 1.2e-13 | 90 | 127 | 3 | 41 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 k+C+C++skClk+YC Cfa g++C++ C+C++C+N+ + Pavir.6KG224200.18.p 90 IKNCKCRNSKCLKLYCGCFATGRYCKD-CNCTNCSNNGS 127 699************************.********976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.4E-10 | 88 | 128 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 12.328 | 89 | 250 | IPR005172 | CRC domain |
Pfam | PF03638 | 3.2E-10 | 91 | 125 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
MEALPVVKLP LPKLPVHRSL PKLQVHRPLP KLEMRKPLQQ TSLVLEQESL KQEMLVMLLT 60 SATSINMMLN SQNRWTETLS GSKDKTPASI KNCKCRNSKC LKLYCGCFAT GRYCKDCNCT 120 NCSNNGSHEN ARARQDAINA VLECRTAAFM PKAGSRSCAM QSSETLLSFP SSVDDDKGLV 180 SERNTHGHSE LGPHEVTYRA VLADIVQVED VNELCKLLIL ASRQAAEAFL AGLILSSKCY 240 MRTLSLLTSE * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.6KG224200.18.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235073.1 | 2e-37 | protein tesmin/TSO1-like CXC 7 isoform X1 | ||||
Refseq | XP_014755713.1 | 2e-37 | protein tesmin/TSO1-like CXC 7 isoform X1 | ||||
Refseq | XP_014755714.1 | 3e-38 | protein tesmin/TSO1-like CXC 6 isoform X2 | ||||
TrEMBL | A0A2T7D6P3 | 3e-97 | A0A2T7D6P3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fa01466.1.p | 1e-115 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G29000.1 | 9e-19 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.6KG224200.18.p |