PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG224200.17.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 353aa    MW: 38336.7 Da    PI: 8.6029
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG224200.17.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR41.91.9e-13192229341
                   TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                            k+C+C++skClk+YC Cfa g++C++ C+C++C+N+ +
  Pavir.6KG224200.17.p 192 IKNCKCRNSKCLKLYCGCFATGRYCKD-CNCTNCSNNGS 229
                           689************************.********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.4E-10190230IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163412.328191352IPR005172CRC domain
PfamPF036385.2E-10193227IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDKPPELSPG SVHLDIASAF YAGNPEIATT AAALSQALGP AQTLPRIKPS SQSLQSLLML  60
WPPVIWPTPA AVKHPMPPPP LPPAKKLQVL QISSVLTPAL PDMEALPVVK LPLPKLPVHR  120
SLPKLQVHRP LPKLEMRKPL QQTSLVLEQE SLKQEMLVML LTSATSINMM LNSQNRWTET  180
LSGSKDKTPA SIKNCKCRNS KCLKLYCGCF ATGRYCKDCN CTNCSNNGSH ENARARQDAI  240
NAVLECRTAA FMPKAGSRSC AMQSSETLLS FPSSVDDDKG LVSERNTHGH SELGPHEVTY  300
RAVLADIVQV EDVNELCKLL ILASRQAAEA FLAGLILSSK CYMRTLSLLT SE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG224200.17.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235073.11e-50protein tesmin/TSO1-like CXC 7 isoform X1
RefseqXP_014755713.11e-50protein tesmin/TSO1-like CXC 7 isoform X1
RefseqXP_014755714.12e-51protein tesmin/TSO1-like CXC 6 isoform X2
TrEMBLA0A368RLD21e-109A0A368RLD2_SETIT; Uncharacterized protein
STRINGPavir.Fa01466.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.13e-18Tesmin/TSO1-like CXC domain-containing protein