PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG224200.15.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 334aa    MW: 36924.1 Da    PI: 6.9386
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG224200.15.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR421.8e-1390127341
                   TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                            k+C+C++skClk+YC Cfa g++C++ C+C++C+N+ +
  Pavir.6KG224200.15.p  90 IKNCKCRNSKCLKLYCGCFATGRYCKD-CNCTNCSNNGS 127
                           689************************.********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.4E-1088128IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163411.79589152IPR005172CRC domain
PfamPF036384.8E-1091125IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEALPVVKLP LPKLPVHRSL PKLQVHRPLP KLEMRKPLQQ TSLVLEQESL KQEMLVMLLT  60
SATSINMMLN SQNRWTETLS GSKDKTPASI KNCKCRNSKC LKLYCGCFAT GRYCKDCNCT  120
NCSNNGSHEN ARARQDAINA VLECRTAAFM PKAGSRSCAM QSSETLLSFP SSVDDDKGLV  180
SERNTHGHSE LGPHEVTYRA VLADIVQVED VNELCKLLIL ASRQAAEAFL DSGIMENTST  240
EKLDRAESCL SSTNNDREAV QKEPDIHACL PESSSYERHD TKKPVSPGSQ VLLCNELDTV  300
SQLSRAEDAI HSTTMQNLPD IFRAREVCTD KFP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG224200.15.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T7D6P36e-96A0A2T7D6P3_9POAL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.14e-18Tesmin/TSO1-like CXC domain-containing protein