PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG224200.14.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CPP | ||||||||
Protein Properties | Length: 436aa MW: 47617.7 Da PI: 7.2086 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 41.5 | 2.6e-13 | 192 | 229 | 3 | 41 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 k+C+C++skClk+YC Cfa g++C++ C+C++C+N+ + Pavir.6KG224200.14.p 192 IKNCKCRNSKCLKLYCGCFATGRYCKD-CNCTNCSNNGS 229 689************************.********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.4E-10 | 190 | 230 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 11.795 | 191 | 254 | IPR005172 | CRC domain |
Pfam | PF03638 | 6.9E-10 | 193 | 227 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MDKPPELSPG SVHLDIASAF YAGNPEIATT AAALSQALGP AQTLPRIKPS SQSLQSLLML 60 WPPVIWPTPA AVKHPMPPPP LPPAKKLQVL QISSVLTPAL PDMEALPVVK LPLPKLPVHR 120 SLPKLQVHRP LPKLEMRKPL QQTSLVLEQE SLKQEMLVML LTSATSINMM LNSQNRWTET 180 LSGSKDKTPA SIKNCKCRNS KCLKLYCGCF ATGRYCKDCN CTNCSNNGSH ENARARQDAI 240 NAVLECRTAA FMPKAGSRSC AMQSSETLLS FPSSVDDDKG LVSERNTHGH SELGPHEVTY 300 RAVLADIVQV EDVNELCKLL ILASRQAAEA FLDSGIMENT STEKLDRAES CLSSTNNDRE 360 AVQKEPDIHA CLPESSSYER HDTKKPVSPG SQVLLCNELD TVSQLSRAED AIHSTTMQNL 420 PDIFRAREVC TDKFP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG224200.14.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A368RLD2 | 1e-108 | A0A368RLD2_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Fa01466.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13846 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 7e-18 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG224200.14.p |