PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG224200.11.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CPP | ||||||||
Protein Properties | Length: 315aa MW: 34215.6 Da PI: 8.3731 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 42.2 | 1.7e-13 | 154 | 191 | 3 | 41 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 k+C+C++skClk+YC Cfa g++C++ C+C++C+N+ + Pavir.6KG224200.11.p 154 IKNCKCRNSKCLKLYCGCFATGRYCKD-CNCTNCSNNGS 191 689************************.********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.4E-10 | 152 | 192 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 12.328 | 153 | 314 | IPR005172 | CRC domain |
Pfam | PF03638 | 4.5E-10 | 155 | 189 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MDKPPELSPG SVHLDIASAF YAGNPEIATT AAALSQALGP AQTLPRIKPS SQSLQSLLML 60 WPPVIWPTPA AVKHPMPPPP LPPAKKLQVH RPLPKLEMRK PLQQTSLVLE QESLKQEMLV 120 MLLTSATSIN MMLNSQNRWT ETLSGSKDKT PASIKNCKCR NSKCLKLYCG CFATGRYCKD 180 CNCTNCSNNG SHENARARQD AINAVLECRT AAFMPKAGSR SCAMQSSETL LSFPSSVDDD 240 KGLVSERNTH GHSELGPHEV TYRAVLADIV QVEDVNELCK LLILASRQAA EAFLAGLILS 300 SKCYMRTLSL LTSE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG224200.11.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235073.1 | 1e-51 | protein tesmin/TSO1-like CXC 7 isoform X1 | ||||
Refseq | XP_014755713.1 | 1e-51 | protein tesmin/TSO1-like CXC 7 isoform X1 | ||||
Refseq | XP_014755714.1 | 2e-52 | protein tesmin/TSO1-like CXC 6 isoform X2 | ||||
TrEMBL | A0A2T7D6P3 | 2e-87 | A0A2T7D6P3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fa01466.1.p | 1e-150 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 2e-18 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG224200.11.p |