PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG211100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 177aa    MW: 19370.9 Da    PI: 7.5781
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG211100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_122.72.2e-0788112327
                          XXCHHHCHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkae 27 
                          +++r +r+++NRe+A rsR+RK+a+
  Pavir.6KG211100.1.p  88 DDRRSIRMMRNRESALRSRARKRAS 112
                          5799******************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-786159IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.7E-1487160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MAANYHHYQM AVHAAAAAAA AWREPDSPQL SFMSGCSSLF SISTLQDDDD GAVVIAGHAL  60
PSTPISLAGF AGDEVDMEVQ QISGGSGDDR RSIRMMRNRE SALRSRARKR ASRDVQDFID  120
GIQSLMAYVE NLEKEVRRLV DENLKLKKQC KELKLEVAAL VLPTKSSLRR TSSTQF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.196260.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG211100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0338585e-96BT033858.1 Zea mays full-length cDNA clone ZM_BFc0165B20 mRNA, complete cds.
GenBankJX4699615e-96JX469961.1 Zea mays subsp. mays clone UT3223 bZIP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812603.11e-105bZIP transcription factor 46-like
TrEMBLA0A2S3HG731e-104A0A2S3HG73_9POAL; Uncharacterized protein
TrEMBLA0A2T7DU081e-104A0A2T7DU08_9POAL; Uncharacterized protein
TrEMBLA0A3L6PES21e-104A0A3L6PES2_PANMI; Protein FD-like
STRINGPavir.J01346.1.p1e-127(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40173072