PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG211100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 177aa MW: 19370.9 Da PI: 7.5781 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 22.7 | 2.2e-07 | 88 | 112 | 3 | 27 |
XXCHHHCHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkae 27 +++r +r+++NRe+A rsR+RK+a+ Pavir.6KG211100.1.p 88 DDRRSIRMMRNRESALRSRARKRAS 112 5799******************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.6E-7 | 86 | 159 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.7E-14 | 87 | 160 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MAANYHHYQM AVHAAAAAAA AWREPDSPQL SFMSGCSSLF SISTLQDDDD GAVVIAGHAL 60 PSTPISLAGF AGDEVDMEVQ QISGGSGDDR RSIRMMRNRE SALRSRARKR ASRDVQDFID 120 GIQSLMAYVE NLEKEVRRLV DENLKLKKQC KELKLEVAAL VLPTKSSLRR TSSTQF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.19626 | 0.0 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG211100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033858 | 5e-96 | BT033858.1 Zea mays full-length cDNA clone ZM_BFc0165B20 mRNA, complete cds. | |||
GenBank | JX469961 | 5e-96 | JX469961.1 Zea mays subsp. mays clone UT3223 bZIP-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812603.1 | 1e-105 | bZIP transcription factor 46-like | ||||
TrEMBL | A0A2S3HG73 | 1e-104 | A0A2S3HG73_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DU08 | 1e-104 | A0A2T7DU08_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6PES2 | 1e-104 | A0A3L6PES2_PANMI; Protein FD-like | ||||
STRING | Pavir.J01346.1.p | 1e-127 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4017 | 30 | 72 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG211100.1.p |