PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG210400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 437aa    MW: 47352.9 Da    PI: 5.8802
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG210400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89e-1761105147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r +WT eE+e++++a k++G   W+ I +++g ++t+ q++s+ qk+
  Pavir.6KG210400.1.p  61 REKWTDEEHEKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 105
                          789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.36E-1655109IPR009057Homeodomain-like
PROSITE profilePS5129421.66256110IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-1058108IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-1559108IPR006447Myb domain, plants
SMARTSM007173.2E-1460108IPR001005SANT/Myb domain
PfamPF002493.1E-1461104IPR001005SANT/Myb domain
CDDcd001673.12E-1163106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MASMVQLEER DGLDSSGLPI DKRRPLDAAK SPLMDDSMQP KEGMDGYPVK VRKPYTITKQ  60
REKWTDEEHE KFLEALKLYG RSWRQIQEHI GTKTAVQIRS HAQKFFSKVV REPGASNAIE  120
IPPPRPKRKP LHPYPRKCAD SSTIANPAMG QPKLASISSS SGSDQENGSP VSVLSAMQSD  180
AFGSSVSNPS TGCTSPASSD DGNNVPVLVN EENLLTQQIE DDQSGQELKL DNSDGDLSEE  240
DSSSGVQETS LKLFGKTVII PDTKKVCSSD GECGDGEKRS QSSEQEASQA SSIGGIAAYP  300
AHNGWLLPYH SLQFHMGESD ARISPLHVWW PCYGFPVGDP RGFGMGLHIE GTCESDTDKS  360
PSVESSSNCM SYIQSMAPTN CKVVKESLGG AIQVPEPALS FELKPSANSA FIRVKPGSNR  420
GQSVRGFVPY KRFKVQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.130240.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG210400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966527.10.0uncharacterized protein LOC101785788
TrEMBLA0A3L6S0P20.0A0A3L6S0P2_PANMI; Uncharacterized protein
STRINGPavir.J00602.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77833647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.11e-39MYB_related family protein