PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG177000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CO-like
Protein Properties Length: 282aa    MW: 28343.5 Da    PI: 6.6591
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG177000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.64e-061658542
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                          C+ ++   +  +C  +   lC  C  + H        H++vpl
  Pavir.6KG177000.1.p 16 SCAVCGGA-AAVYCAADAAALCSPCDAAVHAAnllasrHERVPL 58
                         6******9.*********************66899999999986 PP
2CCT67.83e-23195238144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R a+++RY+eKrk+RkF+K+irY+sRKa+Ae RpR+KGrFvk+a
  Pavir.6KG177000.1.p 195 RVARVQRYREKRKNRKFQKTIRYASRKAYAEARPRIKGRFVKRA 238
                          89****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.1E-111258IPR000315B-box-type zinc finger
PROSITE profilePS501199.3991258IPR000315B-box-type zinc finger
PfamPF062032.5E-17195237IPR010402CCT domain
PROSITE profilePS5101716.331195237IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MMGSEGSTSP AAGGASCAVC GGAAAVYCAA DAAALCSPCD AAVHAANLLA SRHERVPLAM  60
AAAAAAASGV YDDLFAPDDV DAASSWPEAA APAQGQGSPH QNGSSSTSFT TSDSGAEGRS  120
LFDLLSDVDL ATAACVTGGG YLPDGLAPVH HGGAAAPLWS QPGMAAWAAA WSSPADTAAV  180
VVPGAAAVVA AAAERVARVQ RYREKRKNRK FQKTIRYASR KAYAEARPRI KGRFVKRAPA  240
AAAATNASDT AKFWLSFSDD ARDDGVGFYV DAAAYGVVPS F*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.37390.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG177000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973094.11e-125zinc finger protein CONSTANS-LIKE 1
TrEMBLK3YJ051e-123K3YJ05_SETIT; Uncharacterized protein
STRINGPavir.Fa01306.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130662224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-17CONSTANS-like 5