PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG177000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CO-like | ||||||||
Protein Properties | Length: 282aa MW: 28343.5 Da PI: 6.6591 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.6 | 4e-06 | 16 | 58 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ ++ + +C + lC C + H H++vpl Pavir.6KG177000.1.p 16 SCAVCGGA-AAVYCAADAAALCSPCDAAVHAAnllasrHERVPL 58 6******9.*********************66899999999986 PP | |||||||
2 | CCT | 67.8 | 3e-23 | 195 | 238 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a+++RY+eKrk+RkF+K+irY+sRKa+Ae RpR+KGrFvk+a Pavir.6KG177000.1.p 195 RVARVQRYREKRKNRKFQKTIRYASRKAYAEARPRIKGRFVKRA 238 89****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 4.1E-11 | 12 | 58 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.399 | 12 | 58 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 2.5E-17 | 195 | 237 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.331 | 195 | 237 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MMGSEGSTSP AAGGASCAVC GGAAAVYCAA DAAALCSPCD AAVHAANLLA SRHERVPLAM 60 AAAAAAASGV YDDLFAPDDV DAASSWPEAA APAQGQGSPH QNGSSSTSFT TSDSGAEGRS 120 LFDLLSDVDL ATAACVTGGG YLPDGLAPVH HGGAAAPLWS QPGMAAWAAA WSSPADTAAV 180 VVPGAAAVVA AAAERVARVQ RYREKRKNRK FQKTIRYASR KAYAEARPRI KGRFVKRAPA 240 AAAATNASDT AKFWLSFSDD ARDDGVGFYV DAAAYGVVPS F* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.3739 | 0.0 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG177000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973094.1 | 1e-125 | zinc finger protein CONSTANS-LIKE 1 | ||||
TrEMBL | K3YJ05 | 1e-123 | K3YJ05_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Fa01306.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13066 | 22 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 1e-17 | CONSTANS-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG177000.1.p |