PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG116900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 263aa    MW: 27550 Da    PI: 6.3752
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG116900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.2e-1170116354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r+h e+E+rRR+ri+s +++Lr +l  +     +K +Ka+ L kAve +++L
  Pavir.6KG116900.1.p  70 RNHREAEKRRRERIKSHLDRLRNVLSCD-----PKIDKASLLAKAVERVRDL 116
                          78***********************997.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.08767116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-1270124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-870116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-1171120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-973122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MFPAAEVSAL AAGRQGERGV LPMLPPFFMG SIWPTAADGA GAGAADSEED EAAAAAAAAA  60
AHDRALAASR NHREAEKRRR ERIKSHLDRL RNVLSCDPKI DKASLLAKAV ERVRDLKQRV  120
AGVGEAAPAH LFPTEHDEIV VLASGGGAVF EASVCCDDRS DLLPELIETL RALRLRTLRA  180
EMATLGGRVR NVLVLARNVD GGGVAGDDDG YGRTDSADSV ESNGGGDFIK EALRALVERP  240
GAGGGDRPKR RRVSDTNMQA AA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248252KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG116900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279660.0KJ727966.1 Zea mays clone pUT6079 bHLH transcription factor (bHLH48) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981312.11e-123transcription factor bHLH106-like
SwissprotO806742e-48BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A368SD611e-122A0A368SD61_SETIT; Uncharacterized protein
STRINGPavir.J24868.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.17e-25bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]