PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.6KG090400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 239aa MW: 26470.1 Da PI: 4.3038 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 143.9 | 3.7e-45 | 72 | 175 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql++fw+ q +++tdfk h+lPlarikki+kad dv +i+ eaPvl++kace+fi eltlr+w ha+e krrtlkk+d++aa++ t+ Pavir.6KG090400.1.p 72 QLQAFWSGQldeSKQTTDFKTHSLPLARIKKIMKADSDVPRIAGEAPVLFAKACEMFIQELTLRAWFHADEDKRRTLKKNDVTAALSGTE 161 89*****996656789************************************************************************** PP NF-YC 88 ifdflvdivprdel 101 +fdflvd+ p d+l Pavir.6KG090400.1.p 162 VFDFLVDTGPSDKL 175 ********999976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.44E-30 | 39 | 166 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 6.0E-32 | 86 | 157 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.5E-21 | 94 | 157 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence Send to blast |
MDMEKQPSET TVNQGMTNGD TPAALASVSP SAGTSIAPAS QDAPVDPVIQ PHSLDQNQVA 60 SQQTHNSHQQ QQLQAFWSGQ LDESKQTTDF KTHSLPLARI KKIMKADSDV PRIAGEAPVL 120 FAKACEMFIQ ELTLRAWFHA DEDKRRTLKK NDVTAALSGT EVFDFLVDTG PSDKLKGDGA 180 VLPTTTTVQE EDDDPYRDYC WDDYSPPWSP DDSPGPDLRN VTCDDPRYYT YIHEYYSL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-41 | 80 | 171 | 3 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 144 | 150 | RRTLKKN |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.6KG090400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021321034.1 | 1e-78 | nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | A0A3L6PNJ3 | 1e-150 | A0A3L6PNJ3_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Fa02054.1.p | 1e-177 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19726 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G56170.2 | 3e-50 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.6KG090400.1.p |