PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG082300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 409aa    MW: 41909.3 Da    PI: 7.441
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG082300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.56.4e-052993361254
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++  L++l+ +      +K + a++L +++eYI+ L
  Pavir.6KG082300.1.p 299 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIRFL 336
                          677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.903287336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-9297358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-11297357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-5297340No hitNo description
SMARTSM003530.0097298342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MADHQEVIHP AAAAGAGGAS HGHGGGDWWS TAVSCSPDQL PGFGSGLSPA APADGSNRSR  60
SGNAASSESP GSNSLATGGS SITFQEPAGV ADPGAVATGL AGGWNQPYYL DGSGFHGYMS  120
SSRGDQVHLG LRSPSSNNNS LMLQDPHDPN HQFLSNLGLE LLSSPTSPSG GFRSSSLLRS  180
LTEPAAAAAK PSLGFQQYHQ QTMNQAPSTI REALQFTNST PFWNPSAGFA AAEGAASLGS  240
AAGPPSPGQS RPASLAAKSA LEGAGDSSSI ITKKANTDPT PLKKARTGTP SPLPTFKVRK  300
EKLGDRITAL QQLVSPFGKT DTASVLHETI EYIRFLHQQV GSLSAPYLKN RQQVPHLKVS  360
RDGGEEAAAA AKGDLTGRGL CLVPISSTFG VANETPVDFW SPFGAAFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG082300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821266.10.0transcription factor bHLH112-like isoform X1
TrEMBLA0A3L6PM300.0A0A3L6PM30_PANMI; Uncharacterized protein
STRINGPavir.Fa02016.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.32e-42bHLH family protein