PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG074900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 707aa    MW: 83053.5 Da    PI: 9.6711
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG074900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.71.9e-1344124290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          f n Y++  GF v k +++k+      +k  ++C+k+ k++e k+  +k+r+++ ++ tgCk ++ v ++ +g+w+ ++++l HnH+l+
  Pavir.6KG074900.1.p  44 FVNIYGQVNGFAVFKGRNYKN------KKFFLMCNKSKKAAEPKNP-HKKRKRSYVKGTGCKMRIIVVLQ-QGRWKFSDVDLVHNHDLV 124
                          7789****************9......45779******99999988.9999******************9.9***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.6E-1144124IPR004330FAR1 DNA binding domain
PfamPF105512.0E-33248341IPR018289MULE transposase domain
PROSITE profilePS509669.297506542IPR007527Zinc finger, SWIM-type
SMARTSM005750.0037517544IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MDEEGEDAVA EDEEYLFPNP DEAEGTKKPE IGMSFDTLDD AHRFVNIYGQ VNGFAVFKGR  60
NYKNKKFFLM CNKSKKAAEP KNPHKKRKRS YVKGTGCKMR IIVVLQQGRW KFSDVDLVHN  120
HDLVSSPSLT KFFINHRYMT VEEKKFSRIL QEARIKPRRI MQIFRKMKGS FKNMNFGRTQ  180
LKNLKQADRK QKMRNTDIDS TMNYVKKMQK QHPGFYYTMR TDDDNTVRSI FWTDASSRLN  240
YKLYGDFISF DTTFSTNKYN MPFAPLVGIN GHGRTVVFGY ALLENQTAET FSWLFNVLLE  300
VMDGRRPEII ITDQDAAMKK AIFEVFGTEV HRNCFWHIMR NARENLGTLL KDIENLGKRI  360
REENSSLKLM WKNRHMWVPA YFMDVFCPFI KTTGRSESTN SSFKDYVLRK DSIETFLQQC  420
EIFQEEQAEI ERRDRFESNV QEPVFASMQM IERHAAEVYT GSIYLKFQKE VHNSGAYSIE  480
EVEKDVKYNV HRLIQHKDIE FYRKTFTIEV DQNYNSFNCI CKKYNMDGIV CCHVLRLFTQ  540
LGIHKIPDNY IKQRWTKSYL EEELKRHKLK GLEQIVDCGD DPIFRHAMMM NSLSEMCSKV  600
CKDSERSEKF MKEVQMIFDR MECEENASQS TDLVVYKDPA IVEAVSVDKG HRLCRPAEKS  660
SMQKIQKEKA AKEKAAKMKE NATPKKKQIS KQPPKKKARQ KQMLVK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17987PKNPHKKRK
28489KKRKRS
3152160ARIKPRRIM
4693699PKKKARQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG074900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825589.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0A9T3X60.0A0A0A9T3X6_ARUDO; Uncharacterized protein
STRINGPavir.J10440.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-78FAR1-related sequence 5