PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG072100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 678aa    MW: 78288.5 Da    PI: 6.9309
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG072100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.19.7e-2626118191
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                          +fYn+YA + GFsvrks+   +++++eit r++vCs++g+ree+  k + k+rr+r  tr+gC akl++ +++ +gkw+v+++  eHnH+
  Pavir.6KG072100.1.p  26 QFYNAYALSKGFSVRKSYVDWNSDHTEITLRRYVCSCKGYREEKYVKkEIKKRRPRDITRVGCPAKLVIALDRnSGKWYVKNFIDEHNHP 115
                          6****************************************9997663679999*****************999**************** PP

                 FAR1  89 lap 91 
                          l+p
  Pavir.6KG072100.1.p 116 LVP 118
                          986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-2426118IPR004330FAR1 DNA binding domain
PfamPF105512.1E-30219307IPR018289MULE transposase domain
PROSITE profilePS509669.99477517IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MADLENLMEY SEIVSKMFAD EDEGYQFYNA YALSKGFSVR KSYVDWNSDH TEITLRRYVC  60
SCKGYREEKY VKKEIKKRRP RDITRVGCPA KLVIALDRNS GKWYVKNFID EHNHPLVPAD  120
LGCLLRSHRS ISDALKTEIV ELGVAGIRKH QIFEIMEMQC GYDKVGYTSR DLYNFCHLYK  180
QVIIAAGDAQ TIINHLMEHQ NRDSDFFFMY MTDGEGHLTY KTNRYNLPLV PFVGVNHHYR  240
TVIFGCGIIS HENIESYVWL LKTFTEANVQ KHPISVITDG NLAMQRAISV VWPNSPHRLC  300
GWHIEENLVR NVHDDTVKAQ FRIFMYDLCS IEEIERKWQA FFETYDVTED SWIYQMYEVR  360
ATWCAAYHAG NRYLGLRSNQ RSESMNSRLQ MKLDGKMTLL EMVQHYDSCL TKVCKIEVDD  420
DANALQSEPF TDPYASILEV NANKSMEAAK KCSLVEILDG DDTTEYIVGR SDRDMMYYVK  480
YELTEEANLK EISCSCRKLQ SLRTPCSHIF FVLGIQDESM LPDYCVLVRW IMGAKLAFPP  540
IRKSTMYDYS PTLLRYRELR NLSLAAFFAA SRSTEGYERI KHVLEQEAPV IMPNAGANKG  600
NMYGPVLPQA PEADCEEFRD VLDLMHVPGR GALKKKLKSS SDKTRADSKC SLCKGQGHNR  660
RICHLRLEVV FDNVHQS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1632638LKKKLKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG072100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441960.20.0protein FAR1-RELATED SEQUENCE 5
TrEMBLI1HMH80.0I1HMH8_BRADI; Uncharacterized protein
STRINGPavir.J30092.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-70FAR1-related sequence 5