PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG070800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 675aa    MW: 74706.9 Da    PI: 4.6066
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG070800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.45e-5291421128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lp GfrFhPtdeelv +yLk k++g+ +++ evi+e+d++k+ePwdLp k  +++++ ew+fF+++d+ky++g+r+nrat++gyWkatgk
  Pavir.6KG070800.1.p   9 LPLGFRFHPTDEELVRHYLKGKITGQINSEVEVIPEIDVCKCEPWDLPdKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGK 98 
                          699************************9999****************96446677888******************************** PP

                  NAM  89 dkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d+ ++sk    k++ +g+kktLvf++grapkge+t W+mheyr 
  Pavir.6KG070800.1.p  99 DRIIKSKgdkrKQHIIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142
                          ******987666666***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-583163IPR003441NAC domain
PROSITE profilePS5100556.8849163IPR003441NAC domain
PfamPF023651.3E-2710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MTVMELKALP LGFRFHPTDE ELVRHYLKGK ITGQINSEVE VIPEIDVCKC EPWDLPDKSL  60
IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR IIKSKGDKRK QHIIGMKKTL  120
VFHRGRAPKG ERTGWIMHEY RTTEPGFESG EQGGYVLYRL FRKQEEKPER PSPDEVDRSG  180
YSPTPSRSSP DNIEVNEEAN TPLNRESPES GLHESPIELP KSVETHAMPM TRWLADRNDN  240
LVATTADVSR MPIIGHANVP EVDPSAGASA QFVHPQNGNG GFNNFVPDIA PNLPHGNAFF  300
SDFQQGAFDF DGNMNPPDAL DAFLNQALVD PDEHSSTTSK VQYDSDIPME FDNHGVAQGE  360
ECWWANLDFV LDEPNPLNSQ YENTPLLHYD INDQDVLSVD SAADSLHELF NNMEDSSARR  420
AGTGISLMPR QSQPSVQPNS VFTNQGTATR RLRLLLPTDL ESGESITRDE SEDEVSCIVD  480
EVSCIVTPNY VNEAADKDVV SDGDEAESTG IVIRSRPAPS SSSESSLTQQ GTAVRRLRLQ  540
SHLKTGPCPS TDDTSSCIIN ETESHHKAEK SEIVEDASTN FAETVDGILD NCGDSEHKNM  600
PEIVAETAIP EAKSVPRLRK ASEKSGKDAI KQEDGLEPHV RAPAQKGGFQ PYMVGLVLSV  660
PLLLLLCVRV YGWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-47816419169NAC domain-containing protein 19
3swm_B7e-47816419169NAC domain-containing protein 19
3swm_C7e-47816419169NAC domain-containing protein 19
3swm_D7e-47816419169NAC domain-containing protein 19
3swp_A7e-47816419169NAC domain-containing protein 19
3swp_B7e-47816419169NAC domain-containing protein 19
3swp_C7e-47816419169NAC domain-containing protein 19
3swp_D7e-47816419169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.8830.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG070800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820792.10.0protein NTM1-like 9
TrEMBLA0A3L6RM530.0A0A3L6RM53_PANMI; Protein NTM1-like 9
STRINGPavir.Fa01901.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.15e-72NAC 014