PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG062900.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 347aa    MW: 36460.9 Da    PI: 7.3633
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG062900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.33e-32160213255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Pavir.6KG062900.2.p 160 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 213
                          9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-29157214IPR009057Homeodomain-like
SuperFamilySSF466891.79E-15158214IPR009057Homeodomain-like
TIGRFAMsTIGR015577.8E-24160213IPR006447Myb domain, plants
PfamPF002495.7E-7161212IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MELFPSQPDL SLQIGLPTSA TPHDHHHHAA ALSARFFATA GGNGVGNPAA MAPSLQLAMP  60
VPLPLPVQLP MPPSAGAAGA AGLYYHTDAA AAVLRPIRGV PLYQHPHTHA VPPTFPPHAA  120
AGPCFCEPCH VAAGAWRRAG CGAGARVAGF PPAKRAARAP RMRWTSTLHA RFVHAVELLG  180
GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTVKNTERP AASSDQADGF ENGSAGEICD  240
DNSLDLHGYG GDRSESAAAA RHGRLAACND HGSSTGAHGA LWNSSSREDW TGFPSESNTG  300
SMHSLKMQSK SLEILSDMNS CVSETTSSTS ELNLEFTLGR PQNRPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-16161215357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-16161215357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-16161215357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-16161215357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:18594992}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG062900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570080.0EU957008.1 Zea mays clone 1580405 KANADI-like transcription factor FEATHERED mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821359.10.0probable transcription factor RL9 isoform X1
SwissprotQ0J2352e-43ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBLA0A3L6PS850.0A0A3L6PS85_PANMI; Putative transcription factor RL9 isoform X1
STRINGGRMZM2G123308_P021e-170(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.19e-38G2-like family protein