PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG061800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 321aa MW: 33355.5 Da PI: 8.4806 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.6 | 5.2e-07 | 168 | 209 | 2 | 40 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 g WT +E ell + +++ g +W++Ia+ +g +Rt++++ Pavir.6KG061800.1.p 168 GEWTDQELELLRRQMVKHPAGepqRWEKIAAVFGGRRTPESV 209 78********************************99999987 PP | |||||||
2 | Myb_DNA-binding | 21.7 | 4.6e-07 | 257 | 299 | 3 | 43 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 +W++ +d l++a k+++++ +W+++a+ ++ g+t c r Pavir.6KG061800.1.p 257 AWSAGDDRALLNALKEFPKDtamRWEKVAAAVP-GKTKAACMKR 299 6********************************.*******988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.156 | 162 | 209 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.015 | 166 | 219 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.64E-7 | 168 | 211 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-5 | 168 | 210 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-4 | 168 | 203 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.85E-6 | 169 | 211 | No hit | No description |
PROSITE profile | PS50090 | 6.748 | 250 | 304 | IPR017877 | Myb-like domain |
SMART | SM00717 | 5.1E-6 | 254 | 306 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.36E-9 | 255 | 304 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.4E-6 | 257 | 300 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-5 | 257 | 308 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.77E-7 | 257 | 304 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005783 | Cellular Component | endoplasmic reticulum | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MEFVDPWDTQ SRARVVHSGA HSTPSPSSTT AGAPPSLPHA ASCAAAAVAL LAAAYYLPPA 60 YQILSSLLVW AASSLLLAPF APSSATGGDI SVGRGRLLPA QEPAEDPVPD PAPAPRRARR 120 QNPAPTPAKP SDPIAAPVQP VASLQPLQKA AAACGAGVDG SEREEDAGEW TDQELELLRR 180 QMVKHPAGEP QRWEKIAAVF GGRRTPESVI RAAKSGAAAA GGGSFEQFLR KRKPLDPRAE 240 AADASDNAGG GESADAAWSA GDDRALLNAL KEFPKDTAMR WEKVAAAVPG KTKAACMKRI 300 TELKRDFRST KAASQDNALA * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 228 | 233 | LRKRKP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.34898 | 1e-168 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG061800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002443901.1 | 1e-162 | dnaJ homolog subfamily C member 2 | ||||
Refseq | XP_021320123.1 | 1e-162 | dnaJ homolog subfamily C member 2 | ||||
Refseq | XP_021320124.1 | 1e-162 | dnaJ homolog subfamily C member 2 | ||||
Refseq | XP_021320125.1 | 1e-162 | dnaJ homolog subfamily C member 2 | ||||
TrEMBL | C5YHC8 | 1e-161 | C5YHC8_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Fa01887.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10311 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45420.1 | 4e-47 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG061800.1.p |