PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG056200.5.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 774aa    MW: 83022.6 Da    PI: 6.5605
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG056200.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.4e-071171026
                         GGTS--TTTTT-SS-SS CS
              zf-CCCH 10 artGtCkyGdrCkFaHg 26
                         ++ G Ck+G++CkF+H+
  Pavir.6KG056200.5.p  1 MQKGVCKFGSNCKFHHP 17
                         677*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.282119IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-4117IPR000571Zinc finger, CCCH-type
SMARTSM003221.9E-7215292IPR004087K Homology domain
PfamPF000131.8E-11229288IPR004088K Homology domain, type 1
SuperFamilySSF547917.01E-12230297IPR004088K Homology domain, type 1
CDDcd001057.94E-10231288No hitNo description
Gene3DG3DSA:3.30.1370.105.3E-14231293IPR004088K Homology domain, type 1
PROSITE profilePS5008413.691232287IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.6E-19310388IPR004088K Homology domain, type 1
SMARTSM003223.9E-17313387IPR004087K Homology domain
SuperFamilySSF547912.63E-17313388IPR004088K Homology domain, type 1
PROSITE profilePS5008417.527314382IPR004088K Homology domain, type 1
CDDcd001057.67E-17317383No hitNo description
PfamPF000132.1E-16318384IPR004088K Homology domain, type 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MQKGVCKFGS NCKFHHPNRS ESEQEKLNAD SEGSSQQNFY SILGDIIKPH PDLSPRHAPP  60
PLDLPVPSYL LQQSSKGKED ESFSLTQPRQ VYSCPEQSGY QQLADSHFEP AKQVRYTRDQ  120
LLQRRETQQL VDVSKDILEL KQCIEMELHG EDYSWPNNDS NVHTLSYHRY DLADRRERHP  180
RSTAKIPEVA SEEKYWDNID EEKESYGTSG KQEQFCKHDQ LRCFEFDSKP QVGVLIGKAG  240
ETIRNLQTSS GAKIQITKDI DADSSALTRS VELVGTLASV DKAEQLIKSV IAEAEAGGSP  300
ALIARGFGSG QSGSEQFEMT VPDNKVGLII GKGGETIKGL QTRSGARIQL IPQHPPEGVT  360
LTERTVRVTG NKKQIEVAKD LIKQAMNQNF SKHANQSGGF GPQGYHPQGH GAASQWGPRS  420
QSQPGYGYPP RGMPPPQNYN PPYGGYPQQG PPRGGMGWDQ RQGGPPPHPS YQGGGSDYYK  480
QGSQPYDSQP PNYPPGPGSY NSYGQSQAPG YGQPPYQQHA PQQNYGHGYG DPRYNAPPPN  540
QYYGQPPMAP QQGYPQQADP YARPPYSGPG QWAPRGAPAA DGSYQAPPPA SYGPPSQQPP  600
AYGQTYGVAT APDGYAQQGY PQQSGQAPTP YGQNAPAAPG YPQQGTQQGG YAQYPQSQPA  660
YGDQAAPANA NYGYQGAPAD PNYGSAYSQS GYGPPAPSAG QPGYASAPAA GQPAAYGQAG  720
YTQPPTNPPS YDQSAAAPAQ SGYAAPAANP QPAPAKVVSP QPAAGYAGGQ WTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ann_A2e-1223338918176neuro-oncological ventral antigen 1
2anr_A2e-1223338918176neuro-oncological ventral antigen 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG056200.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821234.10.0far upstream element-binding protein 2
TrEMBLA0A2T7D2R40.0A0A2T7D2R4_9POAL; Uncharacterized protein
STRINGPavir.Fa02179.1.p0.0(Panicum virgatum)