PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG056200.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 929aa    MW: 100583 Da    PI: 7.1557
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG056200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.75.4e-103460127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ++++ C++++++G C+yG++C F+H+p
  Pavir.6KG056200.2.p 34 PGEPDCSYYLKFGRCRYGSKCMFNHPP 60
                         5789*********************96 PP
2zf-CCCH21.63.9e-0789114126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ++++ C+++ ++G Ck+  +C+F+H+
  Pavir.6KG056200.2.p  89 PGEPDCSHYVKFGSCKFEMNCRFNHP 114
                          5789*********************8 PP
3zf-CCCH35.12.2e-11147172126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ++t lC+++++ G Ck+G++CkF+H+
  Pavir.6KG056200.2.p 147 PGTGLCSYYMQKGVCKFGSNCKFHHP 172
                          5799*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.3E-53360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.7413361IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-73560IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-53761IPR000571Zinc finger, CCCH-type
SMARTSM003560.01788115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.28188116IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-490114IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5146173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.488146174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6147173IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-9148172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5149171IPR000571Zinc finger, CCCH-type
SMARTSM003221.9E-7370447IPR004087K Homology domain
PfamPF000132.2E-11384443IPR004088K Homology domain, type 1
SuperFamilySSF547918.91E-12385452IPR004088K Homology domain, type 1
CDDcd001051.01E-9386443No hitNo description
Gene3DG3DSA:3.30.1370.106.7E-14386448IPR004088K Homology domain, type 1
PROSITE profilePS5008413.691387442IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.1E-19465543IPR004088K Homology domain, type 1
SMARTSM003223.9E-17468542IPR004087K Homology domain
SuperFamilySSF547913.51E-17468543IPR004088K Homology domain, type 1
PROSITE profilePS5008417.527469537IPR004088K Homology domain, type 1
CDDcd001051.03E-16472538No hitNo description
PfamPF000132.7E-16473539IPR004088K Homology domain, type 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 929 aa     Download sequence    Send to blast
MDSKDDGQVP KPTEALRHAA AGEEPELVVH SQRPGEPDCS YYLKFGRCRY GSKCMFNHPP  60
KHWAGQWQRH AIAAGEKQGQ QAAEYPRRPG EPDCSHYVKF GSCKFEMNCR FNHPSRKQVY  120
FPAGACKCNH HEIEEVRLNS LGLPLRPGTG LCSYYMQKGV CKFGSNCKFH HPNRSESEQE  180
KLNADSEGSS QQNFYSILGD IIKPHPDLSP RHAPPPLDLP VPSYLLQQSS KGKEDESFSL  240
TQPRQVYSCP EQSGYQQLAD SHFEPAKQVR YTRDQLLQRR ETQQLVDVSK DILELKQCIE  300
MELHGEDYSW PNNDSNVHTL SYHRYDLADR RERHPRSTAK IPEVASEEKY WDNIDEEKES  360
YGTSGKQEQF CKHDQLRCFE FDSKPQVGVL IGKAGETIRN LQTSSGAKIQ ITKDIDADSS  420
ALTRSVELVG TLASVDKAEQ LIKSVIAEAE AGGSPALIAR GFGSGQSGSE QFEMTVPDNK  480
VGLIIGKGGE TIKGLQTRSG ARIQLIPQHP PEGVTLTERT VRVTGNKKQI EVAKDLIKQA  540
MNQNFSKHAN QSGGFGPQGY HPQGHGAASQ WGPRSQSQPG YGYPPRGMPP PQNYNPPYGG  600
YPQQGPPRGG MGWDQRQGGP PPHPSYQGGG SDYYKQGSQP YDSQPPNYPP GPGSYNSYGQ  660
SQAPGYGQPP YQQHAPQQNY GHGYGDPRYN APPPNQYYGQ PPMAPQQGYP QQADPYARPP  720
YSGPGQWAPR GAPAADGSYQ APPPASYGPP SQQPPAYGQT YGVATAPDGY AQQGYPQQSG  780
QAPTPYGQNA PAAPGYPQQG TQQGGYAQYP QSQPAYGDQA APANANYGYQ GAPADPNYGS  840
AYSQSGYGPP APSAGQPGYA SAPAAGQPAA YGQAGYTQPP TNPPSYDQSA AAPAQSGYAA  900
PAANPQPAPA KVVSPQPAAG YAGGQWTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ann_A2e-1238854418176neuro-oncological ventral antigen 1
2anr_A2e-1238854418176neuro-oncological ventral antigen 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG056200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821234.10.0far upstream element-binding protein 2
TrEMBLA0A2T7D2R40.0A0A2T7D2R4_9POAL; Uncharacterized protein
STRINGPavir.Fa02179.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.12e-29C3H family protein