PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG038000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 368aa MW: 38583.6 Da PI: 9.4511 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35 | 3.3e-11 | 96 | 140 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+++++ + ++lG+g W+ I+r Rt+ q+ s+ qky Pavir.6KG038000.1.p 96 AWTEDEHKKFLLGLNKLGKGAWRGISRNYVISRTPTQVASHAQKY 140 7*****************************89************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.60.10 | 3.1E-4 | 21 | 39 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS50158 | 8.697 | 21 | 36 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 17.2 | 88 | 145 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.82E-15 | 90 | 146 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.0E-17 | 92 | 144 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 8.4E-9 | 93 | 143 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-9 | 95 | 142 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.74E-7 | 96 | 141 | No hit | No description |
Pfam | PF00249 | 9.2E-10 | 96 | 140 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MTRDGVPPAA AGAGGGGDGP RRCSQCGHHG HNARTCTARP VKLFGVRIGD RPMPIRKSAS 60 MGNLAQLAAE GGGGGGGREE GYGSDGERPH KKRGEAWTED EHKKFLLGLN KLGKGAWRGI 120 SRNYVISRTP TQVASHAQKY FNRQTNVHRR KRRSSLFDMV IDDSSDQLPL SRSSSQEVEQ 180 DDPQSVAALP APVVSPADVA PPPVSVEAPA SVPLPVQVPV PVTTPQPMEQ DSVASSSSAG 240 QAGVVMPEAV PPNLYPMMIP PPYYHPAFVP VPCYGYVPFN YGGPPGVAQV PHEVVKPVAV 300 HSTPPLNVKD LYNMSELSLK GDDPNANSGV PASPLPPKPI GRPERQSAFH GKGPAGGSSG 360 GLIFAVK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.3325 | 0.0 | callus| leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG038000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820943.1 | 0.0 | transcription factor MYBS3-like | ||||
TrEMBL | A0A2T7D3E0 | 0.0 | A0A2T7D3E0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fa01963.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12900 | 26 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 5e-38 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG038000.1.p |