PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG030800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SRS
Protein Properties Length: 436aa    MW: 47877.9 Da    PI: 5.8207
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG030800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70221.66.2e-0767101539
               DUF702   5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathv 39 
                          + +C +CGn a+  C ++ C+ CC      C+ hv
  Pavir.6KG030800.1.p  67 KPKCIQCGNVARSRCPFQCCKACCYKAQNPCHIHV 101
                          568*******************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MPDVKPPAAV PAAAGAKAAA GDAPSPAPAA PAPPPAAANG NGTPQKPPPV PAAAFDMPKP  60
NLRGLNKPKC IQCGNVARSR CPFQCCKACC YKAQNPCHIH VLKQTNTLPD KPSPTSAPLT  120
EQPSTNLPAT GSASRLACLQ KLPHHFLNSL RTKKALAKKD VASINKWRFM KLKEHMQGDI  180
DAENEAYERY TQNVGLLEET FCPMEDAANE SEAEATSSSE EERMDLLVSE AKVRLKSDNE  240
NADSFKERVA TILDEKLKKL QERQSAYDYE DDKPPSNADS FKERVATILD EKLKKLQERQ  300
SAYDYEDDKP PSDQDQDDHT TPVKFSAKQK MERAAKFNEL LGRMTRARSE DDLKPCRDLI  360
EQLFGKEALF GKENGTPMYE SNRMETEPSG RESTTVAAAA RTYSFPKLCT RIEVGEEFAS  420
KVDAEFSSLS EVAQL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.49500.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG030800.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821046.10.0uncharacterized protein LOC112897069
TrEMBLA0A2S3HZV20.0A0A2S3HZV2_9POAL; Uncharacterized protein
STRINGPavir.Fa02251.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP737555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32730.12e-57