PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG017200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 371aa    MW: 41067.4 Da    PI: 9.8123
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG017200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.27e-49401652128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          +pGfrFhPt+eel+++yL+++vegk++++ e i+ vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgyWkatg d+ 
  Pavir.6KG017200.1.p  40 MPGFRFHPTEEELIDFYLRRRVEGKRFNI-ELINLVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRM 128
                          79***************************.89***************888889************************************* PP

                  NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          v +++++ +glkktLvfy g+apkg +++W+m+eyrl
  Pavir.6KG017200.1.p 129 VRVEGNRSIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 165
                          ***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-5639185IPR003441NAC domain
PROSITE profilePS5100555.24639185IPR003441NAC domain
PfamPF023656.4E-2441165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MTRGRAPSSM GGDHHHHHDG SMARGAGGDD GQQQAHDMVM PGFRFHPTEE ELIDFYLRRR  60
VEGKRFNIEL INLVDLYRYD PWDLPALASI GDKEWFFYVP RDRKYRNGDR PNRVTPSGYW  120
KATGADRMVR VEGNRSIGLK KTLVFYVGKA PKGLRSSWIM NEYRLPHGEA DRYQKEISLC  180
RVYKRPGIED NFHLTTTTRS SGSKAAVSME KKHHRTSAAS PRLAPMFDGA HSAAHMSKPY  240
SGTNTIMASS AAARAATMAP QTSMAFLSAA SLSSTTSTEE DGTSLYHLKG ANPPMLPSST  300
HALLNANSTT MATIPIDELS RAIGSYNNQG NPNQPALPSQ GPLLLPFPSM EKIWDWNPLL  360
ESPKVCTSFK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-534118519165NO APICAL MERISTEM PROTEIN
1ut4_B4e-534118519165NO APICAL MERISTEM PROTEIN
1ut7_A4e-534118519165NO APICAL MERISTEM PROTEIN
1ut7_B4e-534118519165NO APICAL MERISTEM PROTEIN
4dul_A4e-534118519165NAC domain-containing protein 19
4dul_B4e-534118519165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.155250.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG017200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822212.10.0NAC domain-containing protein 35-like
SwissprotQ9ZVP82e-94NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A3L6RGA70.0A0A3L6RGA7_PANMI; Protein ATAF2-like
STRINGPavir.Fa02204.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77063650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.12e-95NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]