PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG647000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 263aa    MW: 28243.6 Da    PI: 7.1636
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG647000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.52e-30114167155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          +prl+Wtp+LH+rFv++v++L G++kA+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Pavir.5NG647000.1.p 114 RPRLVWTPQLHKRFVDVVAHL-GIKKAVPKTIMQLMNVEGLTRENVASHLQKYRL 167
                          59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.648111170IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-31111172IPR009057Homeodomain-like
SuperFamilySSF466892.69E-19112171IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-24115167IPR006447Myb domain, plants
PfamPF002494.2E-8117166IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGEEAADDYD LDLDLLGGAD DERVMEWETG LPGGEELTPL SQPLVPPGLA AAFRIPPEPG  60
RTLLDVHRAS AATVSRLRRA SSGSSFQPFV GGGGGGGEGA AVAAADAINN SSKRPRLVWT  120
PQLHKRFVDV VAHLGIKKAV PKTIMQLMNV EGLTRENVAS HLQKYRLYVK RMQGLSNEGP  180
SASDHIFAST PVPHSLVHEP QPHQVPAPPP MYQYHHSMPV PLGMVPSNKS GGSGYAYGYG  240
YHHHQQQASH SQSHHHYRAG DN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-33114170157Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.76140.0callus| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00014PBMTransfer from AT3G46640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG647000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1651722e-99AC165172.2 Zea mays clone CH201-171E16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817497.11e-121transcription factor PCL1
SwissprotQ94DH33e-91PCL1_ORYSJ; Transcription factor PCL1
TrEMBLA0A2S3HMQ41e-120A0A2S3HMQ4_9POAL; Uncharacterized protein
STRINGPavir.Ba03246.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.11e-62G2-like family protein