PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG634600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SRS
Protein Properties Length: 379aa    MW: 39299.4 Da    PI: 11.823
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG634600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702114.71.3e-35113199277
               DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...........aeaaskrkre 77 
                          +sg+++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+r erqq +a+ s++++ ++           +++ask++r 
  Pavir.5NG634600.1.p 113 GSGATTCQDCGNQAKKDCGHNRCRTCCKSRGFDCSTHVKSTWVPAARRLERQQLAASGSASSSPATatasaaaaaaaSASASKKPRL 199
                          57889**********************************************999887665554433223333333222222333332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051429.1E-32116202IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.7E-27118160IPR006510Zinc finger, lateral root primordium type 1
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MRQSAALNYG MPDVGMVVVA PAASFHHTHH HHHHHEAAAA ADPIFPLLSG GPCVLDPDAA  60
KSASGAPPGS AIQFWQPQSP SSAPAANPNP SASPFAYIKK PLPMLDTGAG SSGSGATTCQ  120
DCGNQAKKDC GHNRCRTCCK SRGFDCSTHV KSTWVPAARR LERQQLAASG SASSSPATAT  180
ASAAAAAAAS ASASKKPRLL APSHNNTKLL RRGCSPRRGP PLPAPASARR HACVEADVAP  240
AGTRAEASTA PTQPHVVAAG TMSRGWLHGR SSTPAAAPCR HHLPGPSPPA PARHARPQPL  300
HAPPRAPQRA KPRQRQCSAG RQIRQQEDRI HSRQARIHAI VAPVRHPAMA TKRRPAPAQG  360
GPHRRLAPPS PSSPTALR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.177120.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG634600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8587811e-132HQ858781.1 Zea mays clone UT1767 SRS transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818814.15e-84protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A270R6V61e-82A0A270R6V6_9POAL; Uncharacterized protein
TrEMBLA0A2S3HN061e-82A0A2S3HN06_9POAL; Uncharacterized protein
STRINGPavir.Eb03954.1.p1e-101(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.13e-19Lateral root primordium (LRP) protein-related