PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG632900.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 246aa    MW: 27043.3 Da    PI: 6.4174
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG632900.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.71.2e-1472124155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r+ +hn+ Er RR+++N+ ++ Lr+llP a   + kKls  +++ ++ +YI +Lq
  Pavir.5NG632900.4.p  72 RKHSHNAYERDRRKQLNELYSSLRSLLPDA--DHTKKLSIPTTVSRVLKYIPELQ 124
                          6899*************************7..35666***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-1668139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.75E-1171127No hitNo description
PROSITE profilePS5088814.11971123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-1372139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-1272124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-1077129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEHQLFDDPF SSSISSLEAD IFSAGGQLPS PPWPDLDLDL DDDDIHDLSA PTGNPTSSGG  60
YGSGGGSGGS HRKHSHNAYE RDRRKQLNEL YSSLRSLLPD ADHTKKLSIP TTVSRVLKYI  120
PELQKQVDNL ERRKKELTNA NCKPGVLNTS QIVTPIVSAT CLNDTEIMVQ VSLHSNVAAT  180
SLPLSKCIKV MENEGLHLIS SSTYSTFDNR TFYSLHVQRS QRTMKEECPA FCDELERIIK  240
KKAGA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.34520.0callus| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination. Promotes the accumulation of mugineic acid family phytosiderophores (MAs). Required for ethylene-mediated signaling during iron deficiency responses. Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain. {ECO:0000250|UniProtKB:Q0JFZ0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG632900.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819629.11e-145protein IRON-RELATED TRANSCRIPTION FACTOR 2-like
SwissprotA2WZ601e-108IRO2_ORYSI; Protein IRON-RELATED TRANSCRIPTION FACTOR 2
TrEMBLA0A3L6PK741e-145A0A3L6PK74_PANMI; Transcription factor ORG3-like
STRINGPavir.J04771.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04150.11e-29bHLH family protein