PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG567500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 245aa    MW: 25586.8 Da    PI: 6.5079
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG567500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.19.4e-41571561100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+Ca++C++apyf  ++p+kfa+vhk+FGasnv+k+l ++ e er da+sslvyeA++r+rdPvyG++g i+ lqqq++ l
  Pavir.5NG567500.1.p  57 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVAEGERADAASSLVYEANIRLRDPVYGCMGAISVLQQQVNAL 146
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +ael+++++e
  Pavir.5NG567500.1.p 147 EAELEAVRAE 156
                          *****99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.09556157IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-4057154IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSTERERLDE IGKKIKREPD TAALALAAAS TSTAPADNRA PRRLGLSLGG ALNTVTPCAA  60
CKLLRRRCAQ ECPFAPYFSP HEPHKFAAVH KVFGASNVSK MLLEVAEGER ADAASSLVYE  120
ANIRLRDPVY GCMGAISVLQ QQVNALEAEL EAVRAEILKH RYRQAGAGLM DDARATASFA  180
APVHAGDVVP VVEAGQEVAG GGSAAGAPGM SASSAVYVAE AELPSSTTDH YSSHNPSEHA  240
AYFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-425716011114LOB family transfactor Ramosa2.1
5ly0_B2e-425716011114LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG567500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0686991e-180BT068699.1 Zea mays full-length cDNA clone ZM_BFb0375M24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970407.11e-127LOB domain-containing protein 15
SwissprotQ8L5T54e-71LBD15_ARATH; LOB domain-containing protein 15
TrEMBLA0A1E5VHX51e-135A0A1E5VHX5_9POAL; LOB domain-containing protein 15
STRINGPavir.Eb03580.1.p1e-177(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26303891
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.11e-66LOB domain-containing protein 15
Publications ? help Back to Top
  1. Ohashi-Ito K,Iwamoto K,Fukuda H
    LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    Plant Cell Physiol., 2018. 59(5): p. 989-996
    [PMID:29444288]