PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG562400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 298aa    MW: 31072.9 Da    PI: 8.7061
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG562400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.7e-14143187347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +W++eE+ l++++ ++lG g+W+ I+r + ++Rt+ q+ s+ qk+
  Pavir.5NG562400.1.p 143 PWSEEEHRLFLEGLEKLGRGDWRGISRGFVTTRTPTQVASHAQKF 187
                          8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.898136192IPR017930Myb domain
SuperFamilySSF466895.46E-17138193IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-17139191IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.2E-10140183IPR009057Homeodomain-like
SMARTSM007176.6E-11140190IPR001005SANT/Myb domain
PfamPF002495.6E-11143186IPR001005SANT/Myb domain
CDDcd001676.33E-10143188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MHTVASRCSR CGDGCGHSSM ACRVAATAGQ RRGEAATMRC GGGAAAGLRL FGVQLGAAAG  60
GAASPALQLH KSYSVDCLNL QGSAPAYAAR VTAPLLLSPS PSTALLLSID ECSTERATDG  120
GGYLSDDGAR GGTALRERKK GVPWSEEEHR LFLEGLEKLG RGDWRGISRG FVTTRTPTQV  180
ASHAQKFFLR QNSAGKNSNA KRRSSLFDLV QNCEGGLVSD PSDGKAAATS ESLYPKALCD  240
VYRKESTAIH ARMTRPSSES APVSEKVTVA TEQAHGYHCS PLNLELGMSL TTPSIGT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.319680.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG562400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1846733e-80KF184673.1 Saccharum hybrid cultivar R570 clone BAC 008G08 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807743.11e-168transcription factor MYBS3-like
TrEMBLA0A3L6R7091e-177A0A3L6R709_PANMI; Uncharacterized protein
STRINGPavir.J35324.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.16e-39MYB_related family protein