PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG556900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 319aa MW: 35683.4 Da PI: 8.4542 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.1 | 6.9e-53 | 22 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelvv+yL++kv++++l++ +i+evd+yk++PwdLp+k+ ++kewyfF++rd+ky++g+r+nra+ +gyWkatg dk Pavir.5NG556900.1.p 22 LPPGFRFHPTDEELVVHYLCRKVARQQLPV-PIIAEVDLYKFDPWDLPEKALFGRKEWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADK 110 79****************************.88***************8877899*********************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ k ++ g+kk Lvfy+g+ap+g+ktdW+mheyrl Pavir.5NG556900.1.p 111 PITPKgCARAAGIKKALVFYSGKAPRGVKTDWIMHEYRL 149 ***9877788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-63 | 18 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.935 | 22 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-27 | 23 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MAMAAAAAEG SGRRDAEAEL NLPPGFRFHP TDEELVVHYL CRKVARQQLP VPIIAEVDLY 60 KFDPWDLPEK ALFGRKEWYF FTPRDRKYPN GSRPNRAAGR GYWKATGADK PITPKGCARA 120 AGIKKALVFY SGKAPRGVKT DWIMHEYRLA DADRAPGKKG SQKLDEWVLC RLYNKKNNWE 180 KVKEEGLEAP PHHHHHHHHR QSAGEVMDAL ADSMSDSFQT HDSDIDNASG MQNSFGNMAQ 240 QGVQAMRNGL GTVTVKEDSD WFTGLNLDEL QAPYSMAQMV NPIPVHQTMN LAAGQGHGYL 300 QSMSSPSMKM WQTILPPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-95 | 14 | 181 | 7 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.1297 | 0.0 | callus| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf blades and callus. Weakly expressed in developing flowers. {ECO:0000269|PubMed:10660065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG556900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM017003 | 0.0 | KM017003.1 Miscanthus lutarioriparius NAC4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816775.1 | 0.0 | NAC domain-containing protein 68-like | ||||
Swissprot | Q52QH4 | 1e-169 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | A0A3L6QYH5 | 0.0 | A0A3L6QYH5_PANMI; NAC domain-containing protein 68-like | ||||
STRING | Pavir.Eb03542.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5389 | 37 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 2e-83 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG556900.1.p |