PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG554300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 394aa    MW: 42961.6 Da    PI: 8.6189
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG554300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.62.6e-1276135155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++ +g+++A+++d    +     k+ ++++lg f+ +e Aa  ++ a++k++g
  Pavir.5NG554300.1.p  76 SIYRGVTRHRATGKFEAHLWDrH-ARSpaksKKgRQVYLGAFDNEEAAAHTYDLAALKYWG 135
                          57*******************44.3446657557*************************98 PP
2AP245.71.6e-14180235356
                  AP2   3 ykGV.....rwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                          y+GV     +++++ g+W+A+I         + k+ +lg fgt eeAa+a++ a+++l+g+
  Pavir.5NG554300.1.p 180 YRGVaklwiCRHHRIGKWEARIGYaN-----CkKYLYLGIFGTQEEAARAYDLAALELRGH 235
                          88888888899**********76633.....44**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-976135IPR001471AP2/ERF domain
CDDcd000184.77E-1576148No hitNo description
SuperFamilySSF541712.22E-1276147IPR016177DNA-binding domain
PROSITE profilePS5103218.6177146IPR001471AP2/ERF domain
SMARTSM003802.4E-1977152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-1477147IPR001471AP2/ERF domain
CDDcd000181.86E-18178244No hitNo description
SMARTSM003803.7E-22179248IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-15179242IPR001471AP2/ERF domain
PROSITE profilePS5103217.187179242IPR001471AP2/ERF domain
PfamPF008471.3E-10180235IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-14189244IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MTTRPHSAAT PLSPSSRASS SSSLSCVSSA ASSSGSCYVP AAWPPKCGGK KKRSNRRRAT  60
NGAAGGAVAI LRKNSSIYRG VTRHRATGKF EAHLWDRHAR SPAKSKKGRQ VYLGAFDNEE  120
AAAHTYDLAA LKYWGSESSE CKLNFPVLHE HERMQRMTRE AYLAALRRRS SSFSRGASEY  180
RGVAKLWICR HHRIGKWEAR IGYANCKKYL YLGIFGTQEE AARAYDLAAL ELRGHAAITN  240
FDISSYTDYL QQLEQPIPKA QPKPALKPKA EPVDEEAPLL LPKAGDPIPE PLLTPKPEPE  300
DELAGPLAPL PPGPVLRDAD DVDLAIAEIL PALCMDPADF EARYPARRAR ALGWPSDDPQ  360
LLRGLPLPDD VGFEDDIETL FEALGSAGPG QGGE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG554300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9493532e-72EU949353.1 Zea mays clone 402937 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814616.10.0AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A2S3HQU40.0A0A2S3HQU4_9POAL; Uncharacterized protein
STRINGPavir.Ea03213.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134012730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.34e-50AP2 family protein