PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG543900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 449aa    MW: 49347.4 Da    PI: 7.0373
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG543900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.71.4e-09163203545
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                          k  rr+++NReAAr+sR+RKka+i++Le    +L++  ++L
  Pavir.5NG543900.1.p 163 KTLRRLAQNREAARKSRLRKKAYIQNLESSRLKLTQLEQEL 203
                          7889************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.3E-8159222IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.312161205IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.25E-7163206No hitNo description
CDDcd147083.29E-23163215No hitNo description
PfamPF001709.4E-7163203IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-7164207No hitNo description
PROSITE patternPS000360166181IPR004827Basic-leucine zipper domain
PfamPF141446.7E-33245320IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MRSFGPPQHS IHTDMNSMQP SQVTNFGALA QSAGFRIEDL ANLNTSTLFN LKTNTINNNP  60
LQFGSYGKPI SPSHINTTTT ATAAVRIDPQ SLEHQTGAQQ NLVALPTGNI ENWGESAMAD  120
SPMIDTSTDP DTDERNQMFE QGLVAGPTAS DSSDKSRDKL DQKTLRRLAQ NREAARKSRL  180
RKKAYIQNLE SSRLKLTQLE QELQRARQQG IFISTSGDQP QSANGNGALA FDMEYARWLE  240
EHNKHVNELR AAVNAHAGDN DLRGIVDSIM AHYDEIFRLK GVAAKADVFH VLSGMWKTPA  300
ERCFMWLGGF RSSELLKLLA GQLEPLTDQQ LVGISNLQQS SQQAEDALSQ GMEALQQSLA  360
ETLASGSLGP AGSSGNVANY MGQMAMAMGK LGTLENFLRQ ADNLRLQTLQ QMQRILTTRQ  420
SARALLAISD YFSRLRALSS LWLARPRE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.86490.0callus| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG543900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0344560.0BT034456.1 Zea mays full-length cDNA clone ZM_BFc0173A06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816950.10.0transcription factor TGAL1 isoform X1
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A2S3HR670.0A0A2S3HR67_9POAL; Uncharacterized protein
TrEMBLA0A2T7DFG00.0A0A2T7DFG0_9POAL; Uncharacterized protein
STRINGSb03g037560.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-142TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]