PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG533300.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 381aa    MW: 40282.8 Da    PI: 6.4187
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG533300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.19.9e-062703071254
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Pavir.5NG533300.2.p 270 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 307
                          677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.731258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-11268320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.44E-6268312No hitNo description
SMARTSM003530.0077269313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-9272315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MADEWWSSTS HRSHGTSACS AAPLAVADRV ACGWATSPTA AAESTSSITF QDPYRSSTHQ  60
PLSDAASSLG DPHVDWTQAF LSGRSDNSFQ AVLQDDTVRA QPANDEASAM NNPLIRDMSG  120
GFLVDQAQLA PSPYGTAPPQ QALFDGTAGH NISMYGDSQS LVSYDATAAS MQFSQLLKPS  180
APASGPMQGA AAAAMQYLSG SYLPFGGPLQ SQLLLQALQT KPSSRSSNAN PLTVNDACSP  240
AARKSAPESP AAAKRPRIEA PSPLPTFKVR KEKLGDRITA LQQLVSPFGK TDTASVLHEA  300
IEYIKFLHDQ VSSLSSPYLK NVIPLQHLQQ KGSEEAKASG DTKQDLRSRG LCLVPVASTY  360
TVAGETVPEF WHPTFGGTFR *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.154050.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG533300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698011e-156EU969801.1 Zea mays clone 335797 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817273.10.0transcription factor bHLH110-like isoform X2
TrEMBLA0A2T7DFU20.0A0A2T7DFU2_9POAL; Uncharacterized protein
STRINGPavir.Eb03429.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-50bHLH family protein