PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG533300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 383aa    MW: 40620.2 Da    PI: 6.6002
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG533300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.11e-052723091254
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Pavir.5NG533300.1.p 272 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 309
                          677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.731260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.49E-6270314No hitNo description
SuperFamilySSF474592.75E-11270322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0077271315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-9274317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MADEWWSSTS HRSHGTSACS AAPLAVADRV ACGWATSPTA AAESTSSITF QDPYRSSTHQ  60
PLSDAASSLG DPHVDWTQAF FFRSGRSDNS FQAVLQDDTV RAQPANDEAS AMNNPLIRDM  120
SGGFLVDQAQ LAPSPYGTAP PQQALFDGTA GHNISMYGDS QSLVSYDATA ASMQFSQLLK  180
PSAPASGPMQ GAAAAAMQYL SGSYLPFGGP LQSQLLLQAL QTKPSSRSSN ANPLTVNDAC  240
SPAARKSAPE SPAAAKRPRI EAPSPLPTFK VRKEKLGDRI TALQQLVSPF GKTDTASVLH  300
EAIEYIKFLH DQVSSLSSPY LKNVIPLQHL QQKGSEEAKA SGDTKQDLRS RGLCLVPVAS  360
TYTVAGETVP EFWHPTFGGT FR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.154051e-174leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG533300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698011e-156EU969801.1 Zea mays clone 335797 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817271.10.0transcription factor bHLH110-like isoform X1
TrEMBLA0A2S3HR790.0A0A2S3HR79_9POAL; Uncharacterized protein
STRINGPavir.Eb03429.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-50bHLH family protein