PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG524300.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 280aa MW: 30754.2 Da PI: 11.332 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.2 | 9.5e-11 | 109 | 157 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +rEr RR+r+ ++f+ L llP+ s K K +i+ Av YI++L+ Pavir.5NG524300.2.p 109 RHIMRERLRRERLSQGFADLHALLPPG---ASSKGGKNDIVGAAVGYIRELE 157 599***********************7...69*****************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.13E-14 | 96 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.414 | 105 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-10 | 107 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.7E-8 | 109 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-6 | 111 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MADDDDEDYL MSLFLVLPPE LPAGSAFEAY QRRRRRPTLL ESRLMMTGRG RSGAGANVHR 60 RMFGYLRRVV RRGAAAGTVH PAPADDEATT LVRPPPSQPP RPRSSSRFRH IMRERLRRER 120 LSQGFADLHA LLPPGASSKG GKNDIVGAAV GYIRELEGRK GWLRARNQEL LERAATRWSG 180 GAARNAAAGG DMVVKVRAES QDRAAAVDAF ETVLLRLKAM AALRVTDIRS CFCTGGMWMN 240 VGVEGQVHAR LVSHVTYDAP PFTVEQRTQN LMNSIQGAI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 119 | RLRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG524300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818224.1 | 1e-113 | transcription factor BHLH148-like | ||||
TrEMBL | A0A2T7DG28 | 1e-112 | A0A2T7DG28_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J18322.1.p | 1e-150 | (Panicum virgatum) |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG524300.2.p |