PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG522500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 318aa    MW: 34464.4 Da    PI: 9.5642
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG522500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-10113161455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h +rEr RR+r+ ++f+ L  llP+     s K  K +i+  Av YI++L+
  Pavir.5NG522500.1.p 113 RHIMRERLRRERLSQGFADLHALLPPG---ASSKGGKNDIVGAAVGYIRELE 161
                          599***********************7...69*****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-14100174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.414109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-10111177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-8113161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-6115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MADDDDQADD EDYLMSLALV LPPELPAGSA FEAYQRRRGR PTLLESRLMM TGRGRSGAGA  60
NVHRRMFGYL RRVVRRGAAA GTVHPAPADD EATTLVRPPP SQPHRPRSSS RFRHIMRERL  120
RRERLSQGFA DLHALLPPGA SSKGGKNDIV GAAVGYIREL EGRKGWLRAR NQELLERAAT  180
RWSGGAARNA AAGGDMVVKV RAESQDRAAA VDAFETVLLR LKAMAALRVT DIRSCFCTGG  240
MWMNVGVEGQ VSTREVDEAI TNALMGLAGT PGNGLGIIQI QLDFGTWTLL DLDLVAYGHS  300
FCVGCDRIGL CWIKSIG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118123RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG522500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818224.11e-124transcription factor BHLH148-like
TrEMBLA0A2T7DG281e-123A0A2T7DG28_9POAL; Uncharacterized protein
STRINGPavir.J18322.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127302432