PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG507600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 609aa    MW: 66163.5 Da    PI: 8.552
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG507600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR40.26.5e-13156195242
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                          +kk CnC++s+Clk+YCeCfa+g++C+  C+C++C+N+ e+
  Pavir.5NG507600.1.p 156 KKKCCNCRNSRCLKLYCECFASGSHCDG-CNCTNCFNNPEN 195
                          799*************************.********9875 PP
2TCR50.93.1e-16238276139
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN 
  Pavir.5NG507600.1.p 238 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNF 276
                          589***********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-13155195IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.916156278IPR005172CRC domain
PfamPF036383.3E-9157192IPR005172CRC domain
SMARTSM011142.4E-19238279IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12241276IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MAGKEQGGGE PPQRPPVPAA STQPPIKKLV RQLDFNTAAL AGNPTMAAAA AAVSRALQPR  60
TLPVGLQHPP QHARAAVPMG VPQQLHQLVL PVMRSHQVVG HVPLPRHAVP LAVPVPQLRP  120
VPPQPVQRPP VAVPLKPESP KPRSRLYEGK DSTPTKKKCC NCRNSRCLKL YCECFASGSH  180
CDGCNCTNCF NNPENEVARR EAIDATLERN PDAFRPKIGG SPHANRNEVS SDLPLVGKHN  240
KGCHCKKSGC LKKYCECFQA NILCSENCKC MDCKNFDGSE ERRSLYQGDH KNSVNMQQAT  300
NAAVNGAIGA TGFSSPSTSR KRKHIDPSLD HSNKEHVAQR NGHLPQKNAV PDGSIPISQS  360
VHPPTLGPFK VTYRPLLADI VQEQDIKQLC KLLVVVSGEA AKAYAGRKTQ EERDAEKEDE  420
SGGQKEDDKA GSRGSTNHDR EGNNQDPDHK ASINDNSSRG THTGKAVLEE SWPNCADDQK  480
SNRPMSPGTL ALMCDEQCTM FTTSQNADPQ QTVADNQNQS ELYAEQERVV LTEFRDCLHK  540
LVSCGRRKEE RYSMAIKSET SGHPGQVNGV SRVPYPRVDV PAVVKTFPQG SSSHPVAGKP  600
VTGHFDKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-321482852130Protein lin-54 homolog
5fd3_B5e-321482852130Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.152880.0callus| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG507600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815944.10.0LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 5
TrEMBLA0A2T8IK130.0A0A2T8IK13_9POAL; Uncharacterized protein
STRINGPavir.Eb03237.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-117Tesmin/TSO1-like CXC domain-containing protein