PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG501800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 424aa    MW: 45003.5 Da    PI: 6.9121
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG501800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.99e-351132421105
                  TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.ssssasec.....eaesssssasn 84 
                          aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak ai+el++  ++++a+e+     e+++++ s+s 
  Pavir.5NG501800.1.p 113 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIRNAKSAIDELPDRaEAPPATEAadaaaEPAEQVTSTS- 201
                          689*************************************************************9644444333222233333333333. PP

                  TCP  85 sssg..........................kaaksaakskksqksaa 105
                                                        +    + ks ++++s+a
  Pavir.5NG501800.1.p 202 ---YgfgnpggaissaagsfvphsvggdgvS---GSVKSLFPSSSTA 242
                          ...1234445555555556666666663331...3333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-31115226IPR005333Transcription factor, TCP
PROSITE profilePS5136932.909116174IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MAIKIFSLDM ASRLKLEEDK NQLSKGLDPW SNNNPTATTS TLHYLLQEKE RAQAQEQLQI  60
YHQQGFSYLQ HHRRLQQQQS RAGAGGDGVS SGESTPVDAL ATAFGSGRIV RSAAGRKDRH  120
SKVCTARGLR DRRVRLAAHT AIRFYDVQDR LGYDRPSKAV DWLIRNAKSA IDELPDRAEA  180
PPATEAADAA AEPAEQVTST SYGFGNPGGA ISSAAGSFVP HSVGGDGVSG SVKSLFPSSS  240
TASTTPAHDE YRGSPPDLLS RSTSSQPQEL CLTLQSNQHQ IFSHVPHQNH QGMISGAGVP  300
GWPEHGQRMP SWHASESSAG DGRGAGNGDG HMFGVQARQG LDHQSQLFSQ GEPLQSSGGG  360
WASSARTWLD PLAAIHQPSA MAGQQVGFSH LVGAGGGFMG FLAPAAAQRL QGEEEQGSEA  420
MRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-20121175155Putative transcription factor PCF6
5zkt_B2e-20121175155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.78670.0callus
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG501800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9721190.0EU972119.1 Zea mays clone 375445 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815346.10.0transcription factor PCF7-like
SwissprotQ8LT051e-169PCF7_ORYSJ; Transcription factor PCF7
TrEMBLA0A2T8IK720.0A0A2T8IK72_9POAL; Uncharacterized protein
STRINGPavir.Eb03208.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-32TCP family protein